rs9550377

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0130 (3904/29932,GnomAD)
T=0091 (2657/29116,TOPMED)
T=0151 (757/5008,1000G)
T=0124 (476/3854,ALSPAC)
T=0116 (430/3708,TWINSUK)
chr13:28527544 (GRCh38.p7) (13q12.3)
AD
GWASdb2
1   publication(s)
See rs on genome
19 Enhancers around
14 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.28527544C>T
GRCh37.p13 chr 13NC_000013.10:g.29101681C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.957T=0.043
1000GenomesAmericanSub694C=0.920T=0.080
1000GenomesEast AsianSub1008C=0.652T=0.348
1000GenomesEuropeSub1006C=0.875T=0.125
1000GenomesGlobalStudy-wide5008C=0.849T=0.151
1000GenomesSouth AsianSub978C=0.830T=0.170
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.876T=0.124
The Genome Aggregation DatabaseAfricanSub8714C=0.939T=0.061
The Genome Aggregation DatabaseAmericanSub834C=0.900T=0.100
The Genome Aggregation DatabaseEast AsianSub1604C=0.643T=0.357
The Genome Aggregation DatabaseEuropeSub18478C=0.853T=0.146
The Genome Aggregation DatabaseGlobalStudy-wide29932C=0.869T=0.130
The Genome Aggregation DatabaseOtherSub302C=0.950T=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29116C=0.908T=0.091
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.884T=0.116
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs95503770.000772alcohol dependence21314694

eQTL of rs9550377 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9550377 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr132914202429142159E06740343
chr132914224429142924E06740563
chr132914224429142924E06840563
chr132907121729071321E069-30360
chr132914202429142159E06940343
chr132914224429142924E06940563
chr132910466529104756E0702984
chr132910466529104756E0712984
chr132914202429142159E07140343
chr132914224429142924E07140563
chr132914202429142159E07240343
chr132914224429142924E07240563
chr132914224429142924E07340563
chr132910466529104756E0742984
chr132913196429132615E07430283
chr132913273329133095E07431052
chr132914202429142159E07440343
chr132914224429142924E07440563
chr132910466529104756E0812984









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr132906642329067283E067-34398
chr132906777229071082E067-30599
chr132910490929107742E0673228
chr132906777229071082E068-30599
chr132910490929107742E0683228
chr132906642329067283E071-34398
chr132910490929107742E0713228
chr132906642329067283E072-34398
chr132910490929107742E0723228
chr132906777229071082E073-30599
chr132910490929107742E0733228
chr132910490929107742E0743228
chr132906777229071082E082-30599
chr132910490929107742E0823228