SNP Detail Info-rs9576007

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0487 (14554/29860,GnomAD)
A=0388 (11323/29118,TOPMED)
A=0426 (2135/5008,1000G)
G==0420 (1620/3854,ALSPAC)
G==0394 (1460/3708,TWINSUK)

Position: chr13:86045905 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.86045905G>A
GRCh37.p13 chr 13	NC_000013.10:g.86620040G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.899	A=0.101
1000Genomes	American	Sub	694	G=0.560	A=0.440
1000Genomes	East Asian	Sub	1008	G=0.407	A=0.593
1000Genomes	Europe	Sub	1006	G=0.409	A=0.591
1000Genomes	Global	Study-wide	5008	G=0.574	A=0.426
1000Genomes	South Asian	Sub	978	G=0.490	A=0.510
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.420	A=0.580
The Genome Aggregation Database	African	Sub	8662	G=0.834	A=0.166
The Genome Aggregation Database	American	Sub	836	G=0.550	A=0.450
The Genome Aggregation Database	East Asian	Sub	1606	G=0.400	A=0.600
The Genome Aggregation Database	Europe	Sub	18454	G=0.369	A=0.630
The Genome Aggregation Database	Global	Study-wide	29860	G=0.512	A=0.487
The Genome Aggregation Database	Other	Sub	302	G=0.520	A=0.480
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.611	A=0.388
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.394	A=0.606

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9576007	0.00064	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9576007