SNP Detail Info-rs9584183

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

LOC105370301 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0146 (4373/29902,GnomAD)
C=0146 (729/5008,1000G)
C=0105 (405/3854,ALSPAC)
C=0102 (378/3708,TWINSUK)

Position: chr13:87040024 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87040024T>C
GRCh37.p13 chr 13	NC_000013.10:g.87692279T>C

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105370301 transcript variant X1	XR_931623.2:n.	N/A	Intron Variant
LOC105370301 transcript variant X2	XR_931624.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.667	C=0.333
1000Genomes	American	Sub	694	T=0.900	C=0.100
1000Genomes	East Asian	Sub	1008	T=0.969	C=0.031
1000Genomes	Europe	Sub	1006	T=0.906	C=0.094
1000Genomes	Global	Study-wide	5008	T=0.854	C=0.146
1000Genomes	South Asian	Sub	978	T=0.900	C=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.895	C=0.105
The Genome Aggregation Database	African	Sub	8688	T=0.700	C=0.300
The Genome Aggregation Database	American	Sub	838	T=0.930	C=0.070
The Genome Aggregation Database	East Asian	Sub	1618	T=0.954	C=0.046
The Genome Aggregation Database	Europe	Sub	18458	T=0.913	C=0.086
The Genome Aggregation Database	Global	Study-wide	29902	T=0.853	C=0.146
The Genome Aggregation Database	Other	Sub	300	T=0.850	C=0.150
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.898	C=0.102

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs9584183	0.000103	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87692279	SLITRK5	ENSG00000165300.6	T>C	7.2166e-3	-632591	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9584183