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rs9584217
Organism:
Homo sapiens
Alleles:
C>G
Gene : Feature
None
p-value:
Check p-value
Variation Type:
SNV (Single Nucleotide Variation)
Frequency:
G=0159 (4768/29940,GnomAD)
G=0204 (5960/29118,TOPMED)
G=0157 (785/5008,1000G)
G=0106 (408/3854,ALSPAC)
G=0103 (383/3708,TWINSUK)
Position:
chr13:87069909 (GRCh38.p7) (13q31.1)
Phenotype:
AD
Dataset:
GWASdb2
Publications:
1 publication(s)
Genomic View:
See rs on genome
Enhancer:
0 Enhancer around
Promoter:
0 Promoter around
Variant Details
Frequency
Publications
p-values
eSNP
meSNP
Genomic Coordinates
Sequence Name
Change(s)
GRCh38.p7 chr 13
NC_000013.11:g.87069909C>G
GRCh37.p13 chr 13
NC_000013.10:g.87722164C>G
Population Frequency
Study
Population
Group
Sample #
Ref Allele
Alt Allele
1000Genomes
African
Sub
1322
C=0.628
G=0.372
1000Genomes
American
Sub
694
C=0.900
G=0.100
1000Genomes
East Asian
Sub
1008
C=0.970
G=0.030
1000Genomes
Europe
Sub
1006
C=0.906
G=0.094
1000Genomes
Global
Study-wide
5008
C=0.843
G=0.157
1000Genomes
South Asian
Sub
978
C=0.900
G=0.100
The Avon Longitudinal Study of Parents and Children
PARENT AND CHILD COHORT
Study-wide
3854
C=0.894
G=0.106
The Genome Aggregation Database
African
Sub
8716
C=0.657
G=0.343
The Genome Aggregation Database
American
Sub
838
C=0.930
G=0.070
The Genome Aggregation Database
East Asian
Sub
1618
C=0.954
G=0.046
The Genome Aggregation Database
Europe
Sub
18466
C=0.913
G=0.086
The Genome Aggregation Database
Global
Study-wide
29940
C=0.840
G=0.159
The Genome Aggregation Database
Other
Sub
302
C=0.840
G=0.160
Trans-Omics for Precision Medicine
Global
Study-wide
29118
C=0.795
G=0.204
UK 10K study - Twins
TWIN COHORT
Study-wide
3708
C=0.897
G=0.103
PMID
Title
Author
Journal
23743675
A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.
Kapoor M
Hum Genet
P-Value
SNP ID
p-value
Traits
Study
rs9584217
0.000114
alcohol consumption
23743675
eQTL of rs9584217 in Brain tissues (GTEx Analysis Release V7)
Position (v37)
eGene
GeneID
Variant
p-value
TSS
Tissue
Chr13:87722164
SLITRK5
ENSG00000165300.6
C>G
7.2166e-3
-602706
Cerebellar_Hemisphere
meQTL of rs9584217 in Fetal Brain
Probe ID
Position
Gene
beta
p-value
There is no meQTL annotation for this SNP
Genomic View
GRCh38.p7 chr 13(NC_000013.11:g.87069909C>G)
GRCh37.p13 chr 13(NC_000013.10:g.87722164C>G)
Chromatin Interaction
There is no significant Hi-C chromatin interaction data for this SNP.