rs9587100

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0083 (2480/29878,GnomAD)
G=0111 (3255/29118,TOPMED)
G=0086 (430/5008,1000G)
G=0035 (134/3854,ALSPAC)
G=0040 (149/3708,TWINSUK)
chr13:106179438 (GRCh38.p7) (13q33.2)
AD
GWASdb2
1   publication(s)
See rs on genome
21 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.106179438A>G
GRCh37.p13 chr 13NC_000013.10:g.106831787A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.753G=0.247
1000GenomesAmericanSub694A=0.940G=0.060
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=0.958G=0.042
1000GenomesGlobalStudy-wide5008A=0.914G=0.086
1000GenomesSouth AsianSub978A=0.980G=0.020
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.965G=0.035
The Genome Aggregation DatabaseAfricanSub8696A=0.802G=0.198
The Genome Aggregation DatabaseAmericanSub838A=0.960G=0.040
The Genome Aggregation DatabaseEast AsianSub1622A=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18420A=0.962G=0.037
The Genome Aggregation DatabaseGlobalStudy-wide29878A=0.917G=0.083
The Genome Aggregation DatabaseOtherSub302A=0.890G=0.110
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.888G=0.111
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.960G=0.040
PMID Title Author Journal
21703634A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.Wang KSJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs95871001.92E-05alcohol dependence21703634

eQTL of rs9587100 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9587100 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr13106803271106804383E068-27404
chr13106811814106811981E068-19806
chr13106812035106812152E068-19635
chr13106812214106812354E068-19433
chr13106812484106812553E068-19234
chr13106812564106812666E068-19121
chr13106812564106812666E070-19121
chr13106813076106813151E070-18636
chr13106813268106813439E070-18348
chr13106813548106813874E070-17913
chr13106814371106814469E070-17318
chr13106825722106825908E070-5879
chr13106825917106826102E070-5685
chr13106859057106859237E08127270
chr13106863137106863202E08131350
chr13106824381106824443E082-7344
chr13106824453106824845E082-6942
chr13106824931106825149E082-6638
chr13106825204106825444E082-6343
chr13106825722106825908E082-5879
chr13106864651106865285E08232864