rs9587180

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0183 (5483/29902,GnomAD)
G=0204 (5949/29118,TOPMED)
G=0165 (828/5008,1000G)
G=0119 (458/3854,ALSPAC)
G=0121 (449/3708,TWINSUK)
chr13:106708053 (GRCh38.p7) (13q33.3)
AD
GWASdb2
1   publication(s)
See rs on genome
93 Enhancers around
8 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.106708053A>G
GRCh37.p13 chr 13NC_000013.10:g.107360401A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.674G=0.326
1000GenomesAmericanSub694A=0.890G=0.110
1000GenomesEast AsianSub1008A=0.933G=0.067
1000GenomesEuropeSub1006A=0.868G=0.132
1000GenomesGlobalStudy-wide5008A=0.835G=0.165
1000GenomesSouth AsianSub978A=0.870G=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.881G=0.119
The Genome Aggregation DatabaseAfricanSub8704A=0.710G=0.290
The Genome Aggregation DatabaseAmericanSub836A=0.890G=0.110
The Genome Aggregation DatabaseEast AsianSub1618A=0.944G=0.056
The Genome Aggregation DatabaseEuropeSub18442A=0.851G=0.148
The Genome Aggregation DatabaseGlobalStudy-wide29902A=0.816G=0.183
The Genome Aggregation DatabaseOtherSub302A=0.880G=0.120
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.795G=0.204
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.879G=0.121
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs95871800.00059alcohol dependence20201924

eQTL of rs9587180 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9587180 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr13107332798107334194E067-26207
chr13107334315107334713E067-25688
chr13107335936107336002E067-24399
chr13107336028107336491E067-23910
chr13107364721107365711E0674320
chr13107366246107366296E0675845
chr13107366720107366809E0676319
chr13107366812107366866E0676411
chr13107405207107405464E06744806
chr13107405589107405896E06745188
chr13107405927107406039E06745526
chr13107332798107334194E068-26207
chr13107334315107334713E068-25688
chr13107335936107336002E068-24399
chr13107337592107337764E068-22637
chr13107378777107378827E06818376
chr13107379023107379125E06818622
chr13107379308107379362E06818907
chr13107379697107379762E06819296
chr13107379807107379990E06819406
chr13107405207107405464E06844806
chr13107405589107405896E06845188
chr13107405927107406039E06845526
chr13107332798107334194E069-26207
chr13107334315107334713E069-25688
chr13107338097107338151E069-22250
chr13107338349107338408E069-21993
chr13107338497107338771E069-21630
chr13107364721107365711E0694320
chr13107366246107366296E0695845
chr13107366425107366490E0696024
chr13107366622107366682E0696221
chr13107366720107366809E0696319
chr13107366812107366866E0696411
chr13107367144107367266E0696743
chr13107367287107367439E0696886
chr13107405207107405464E06944806
chr13107405589107405896E06945188
chr13107332798107334194E070-26207
chr13107334315107334713E070-25688
chr13107363030107363106E0702629
chr13107364721107365711E0704320
chr13107390577107390927E07030176
chr13107391034107391136E07030633
chr13107391228107391354E07030827
chr13107391374107391475E07030973
chr13107332798107334194E071-26207
chr13107334315107334713E071-25688
chr13107336028107336491E071-23910
chr13107367144107367266E0716743
chr13107367287107367439E0716886
chr13107379023107379125E07118622
chr13107379308107379362E07118907
chr13107379697107379762E07119296
chr13107379807107379990E07119406
chr13107380146107380261E07119745
chr13107405207107405464E07144806
chr13107405589107405896E07145188
chr13107405927107406039E07145526
chr13107332798107334194E072-26207
chr13107366425107366490E0726024
chr13107366622107366682E0726221
chr13107366720107366809E0726319
chr13107366812107366866E0726411
chr13107332798107334194E073-26207
chr13107366246107366296E0735845
chr13107366425107366490E0736024
chr13107366622107366682E0736221
chr13107366720107366809E0736319
chr13107366812107366866E0736411
chr13107332798107334194E074-26207
chr13107334315107334713E074-25688
chr13107336028107336491E074-23910
chr13107366246107366296E0745845
chr13107366425107366490E0746024
chr13107366622107366682E0746221
chr13107366720107366809E0746319
chr13107366812107366866E0746411
chr13107367144107367266E0746743
chr13107367287107367439E0746886
chr13107405207107405464E07444806
chr13107405589107405896E07445188
chr13107405927107406039E07445526
chr13107408462107408512E07448061
chr13107408555107408747E07448154
chr13107332798107334194E081-26207
chr13107334315107334713E081-25688
chr13107363230107363291E0812829
chr13107364721107365711E0814320
chr13107332798107334194E082-26207
chr13107363030107363106E0822629
chr13107364721107365711E0824320
chr13107390577107390927E08230176










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr13107361701107363024E0671300
chr13107361701107363024E0681300
chr13107361701107363024E0691300
chr13107361701107363024E0711300
chr13107361701107363024E0721300
chr13107361701107363024E0731300
chr13107361701107363024E0741300
chr13107361701107363024E0811300