rs9590055

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0114 (3429/29958,GnomAD)
A=0137 (4013/29118,TOPMED)
A=0108 (543/5008,1000G)
A=0105 (403/3854,ALSPAC)
A=0104 (386/3708,TWINSUK)
chr13:87102125 (GRCh38.p7) (13q31.2)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87102125G>A
GRCh37.p13 chr 13NC_000013.10:g.87754380G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.815A=0.185
1000GenomesAmericanSub694G=0.920A=0.080
1000GenomesEast AsianSub1008G=0.968A=0.032
1000GenomesEuropeSub1006G=0.906A=0.094
1000GenomesGlobalStudy-wide5008G=0.892A=0.108
1000GenomesSouth AsianSub978G=0.880A=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.895A=0.105
The Genome Aggregation DatabaseAfricanSub8712G=0.811A=0.189
The Genome Aggregation DatabaseAmericanSub834G=0.920A=0.080
The Genome Aggregation DatabaseEast AsianSub1620G=0.954A=0.046
The Genome Aggregation DatabaseEuropeSub18490G=0.913A=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29958G=0.885A=0.114
The Genome Aggregation DatabaseOtherSub302G=0.840A=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.862A=0.137
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.896A=0.104
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95900550.00013alcohol consumption23743675

eQTL of rs9590055 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9590055 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07026371
chr138778099087781070E07026610
chr138778113987781194E07026759
chr138778136187781523E07026981
chr138778160987781698E07027229
chr138778189787782225E07027517
chr138778224887782420E07027868
chr138778273087782844E07028350
chr138778399687784117E07029616