rs9594332

Homo sapiens
G>A
LHFP : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0191 (5694/29724,GnomAD)
A=0198 (5767/29118,TOPMED)
A=0195 (978/5008,1000G)
chr13:39434823 (GRCh38.p7) (13q13.3)
AD
GWASdb2
1   publication(s)
See rs on genome
181 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.39434823G>A
GRCh37.p13 chr 13NC_000013.10:g.40008960G>A

Gene: LHFP, lipoma HMGIC fusion partner(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LHFPL6 transcriptNM_005780.2:c.N/AIntron Variant
LHFPL6 transcript variant X1XM_011534861.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.848A=0.152
1000GenomesAmericanSub694G=0.830A=0.170
1000GenomesEast AsianSub1008G=0.675A=0.325
1000GenomesEuropeSub1006G=0.776A=0.224
1000GenomesGlobalStudy-wide5008G=0.805A=0.195
1000GenomesSouth AsianSub978G=0.890A=0.110
The Genome Aggregation DatabaseAfricanSub8672G=0.839A=0.161
The Genome Aggregation DatabaseAmericanSub832G=0.830A=0.170
The Genome Aggregation DatabaseEast AsianSub1614G=0.678A=0.322
The Genome Aggregation DatabaseEuropeSub18306G=0.804A=0.195
The Genome Aggregation DatabaseGlobalStudy-wide29724G=0.808A=0.191
The Genome Aggregation DatabaseOtherSub300G=0.790A=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.801A=0.198
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs95943326.07E-05alcohol consumption23743675

eQTL of rs9594332 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9594332 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr133997934039979491E067-29469
chr133997959739980114E067-28846
chr133998316939983334E067-25626
chr133998364239983764E067-25196
chr133998398439984048E067-24912
chr133998405039985044E067-23916
chr133999028339990382E067-18578
chr133999040939990485E067-18475
chr133999059139990636E067-18324
chr133999076939990856E067-18104
chr133999088639991071E067-17889
chr133999414939994333E067-14627
chr134002266940023442E06713709
chr134002354940023642E06714589
chr134005777440058082E06748814
chr134005818540058405E06749225
chr133995962439960407E068-48553
chr133996054039960621E068-48339
chr133996887839970009E068-38951
chr133998364239983764E068-25196
chr133998398439984048E068-24912
chr133998405039985044E068-23916
chr133998518439985281E068-23679
chr133998562539985903E068-23057
chr133998595639986014E068-22946
chr133998851139990009E068-18951
chr133999004139990091E068-18869
chr133999028339990382E068-18578
chr133999040939990485E068-18475
chr133999059139990636E068-18324
chr133999076939990856E068-18104
chr133999088639991071E068-17889
chr133999292039993082E068-15878
chr133999322339993570E068-15390
chr133999361839993668E068-15292
chr133999374339993801E068-15159
chr133999400039994044E068-14916
chr133999414939994333E068-14627
chr134002266940023442E06813709
chr134002530640027327E06816346
chr134002753040027580E06818570
chr134005564340055693E06846683
chr134005777440058082E06848814
chr134005818540058405E06849225
chr134005845840058539E06849498
chr133995941839959605E069-49355
chr133995962439960407E069-48553
chr133996054039960621E069-48339
chr133996887839970009E069-38951
chr133997959739980114E069-28846
chr133998132439981661E069-27299
chr133998206139982412E069-26548
chr133998242739982627E069-26333
chr133998364239983764E069-25196
chr133998398439984048E069-24912
chr133998405039985044E069-23916
chr133998851139990009E069-18951
chr133999004139990091E069-18869
chr133999028339990382E069-18578
chr133999040939990485E069-18475
chr133999059139990636E069-18324
chr133999076939990856E069-18104
chr133999088639991071E069-17889
chr134002266940023442E06913709
chr134002354940023642E06914589
chr134002382340023932E06914863
chr134002459840024681E06915638
chr134002530640027327E06916346
chr134003444040034499E06925480
chr133995941839959605E070-49355
chr133995962439960407E070-48553
chr133996054039960621E070-48339
chr133996887839970009E070-38951
chr133999115139992277E070-16683
chr134002530640027327E07016346
chr134002753040027580E07018570
chr134002762740027667E07018667
chr134002772040028110E07018760
chr133995907839959138E071-49822
chr133995941839959605E071-49355
chr133995962439960407E071-48553
chr133996054039960621E071-48339
chr133996071439960900E071-48060
chr133996107739961153E071-47807
chr133996887839970009E071-38951
chr133998364239983764E071-25196
chr133998398439984048E071-24912
chr133998405039985044E071-23916
chr133998851139990009E071-18951
chr133999004139990091E071-18869
chr133999028339990382E071-18578
chr133999040939990485E071-18475
chr133999059139990636E071-18324
chr133999076939990856E071-18104
chr133999088639991071E071-17889
chr133999115139992277E071-16683
chr133999237239992432E071-16528
chr133999256439992886E071-16074
chr133999292039993082E071-15878
chr133999322339993570E071-15390
chr134002215440022216E07113194
chr134002266940023442E07113709
chr134002422940024276E07115269
chr134002443740024523E07115477
chr134002459840024681E07115638
chr134002530640027327E07116346
chr134002753040027580E07118570
chr134002762740027667E07118667
chr134002772040028110E07118760
chr133996887839970009E072-38951
chr133997518839976222E072-32738
chr133999004139990091E072-18869
chr134002266940023442E07213709
chr133996054039960621E073-48339
chr133996071439960900E073-48060
chr133996887839970009E073-38951
chr133997518839976222E073-32738
chr133998398439984048E073-24912
chr133998405039985044E073-23916
chr133999028339990382E073-18578
chr133999040939990485E073-18475
chr133999059139990636E073-18324
chr133999076939990856E073-18104
chr133999088639991071E073-17889
chr134002093740020997E07311977
chr134002123740021298E07312277
chr134002154940021633E07312589
chr134002168340021747E07312723
chr134003423840034335E07325278
chr134003511440035154E07326154
chr134005777440058082E07348814
chr134005818540058405E07349225
chr134005845840058539E07349498
chr133995907839959138E074-49822
chr133995941839959605E074-49355
chr133995962439960407E074-48553
chr133996054039960621E074-48339
chr133996071439960900E074-48060
chr133996775239967802E074-41158
chr133996789739967968E074-40992
chr133996887839970009E074-38951
chr133998091039981204E074-27756
chr133998132439981661E074-27299
chr133998206139982412E074-26548
chr133998242739982627E074-26333
chr133998263739982903E074-26057
chr133998398439984048E074-24912
chr133998405039985044E074-23916
chr133998796239988002E074-20958
chr133998820639988344E074-20616
chr133998851139990009E074-18951
chr133999028339990382E074-18578
chr133999040939990485E074-18475
chr133999059139990636E074-18324
chr133999076939990856E074-18104
chr133999088639991071E074-17889
chr133999115139992277E074-16683
chr133999237239992432E074-16528
chr133999256439992886E074-16074
chr133999292039993082E074-15878
chr133999322339993570E074-15390
chr134002266940023442E07413709
chr134002354940023642E07414589
chr134002530640027327E07416346
chr134002952240029634E07420562
chr134002972540030266E07420765
chr134003480040034854E07425840
chr133996887839970009E081-38951
chr133999115139992277E081-16683
chr134001988540020125E08110925
chr134002020440020367E08111244
chr133995907839959138E082-49822
chr133995941839959605E082-49355
chr133995962439960407E082-48553
chr133996887839970009E082-38951
chr133997518839976222E082-32738
chr133997934039979491E082-29469
chr133997959739980114E082-28846
chr134001988540020125E08210925
chr134002020440020367E08211244
chr134004966340049876E08240703