| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 13 | NC_000013.11:g.55347724G>A |
| GRCh37.p13 chr 13 | NC_000013.10:g.55921859G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.769 | A=0.231 |
| 1000Genomes | American | Sub | 694 | G=0.830 | A=0.170 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.905 | A=0.095 |
| 1000Genomes | Europe | Sub | 1006 | G=0.948 | A=0.052 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.869 | A=0.131 |
| 1000Genomes | South Asian | Sub | 978 | G=0.910 | A=0.090 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.939 | A=0.061 |
| The Genome Aggregation Database | African | Sub | 8716 | G=0.799 | A=0.201 |
| The Genome Aggregation Database | American | Sub | 830 | G=0.850 | A=0.150 |
| The Genome Aggregation Database | East Asian | Sub | 1564 | G=0.907 | A=0.093 |
| The Genome Aggregation Database | Europe | Sub | 18434 | G=0.932 | A=0.067 |
| The Genome Aggregation Database | Global | Study-wide | 29846 | G=0.890 | A=0.109 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.970 | A=0.030 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | G=0.868 | A=0.131 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.930 | A=0.070 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs9597162 | 0.000475 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr13 | 55888521 | 55888717 | E069 | -33142 |
| chr13 | 55888521 | 55888717 | E070 | -33142 |
| chr13 | 55888964 | 55889024 | E070 | -32835 |
| chr13 | 55889328 | 55889464 | E070 | -32395 |
| chr13 | 55888521 | 55888717 | E071 | -33142 |
| chr13 | 55888964 | 55889024 | E071 | -32835 |
| chr13 | 55889328 | 55889464 | E071 | -32395 |