SNP Detail Info-rs9597180

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0084 (2542/29962,GnomAD)
G=0108 (3170/29116,TOPMED)
G=0079 (396/5008,1000G)
G=0043 (164/3854,ALSPAC)
G=0053 (198/3708,TWINSUK)

Position: chr13:55445756 (GRCh38.p7) (13q21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.55445756A>G
GRCh37.p13 chr 13	NC_000013.10:g.56019891A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.772	G=0.228
1000Genomes	American	Sub	694	A=0.930	G=0.070
1000Genomes	East Asian	Sub	1008	A=0.990	G=0.010
1000Genomes	Europe	Sub	1006	A=0.973	G=0.027
1000Genomes	Global	Study-wide	5008	A=0.921	G=0.079
1000Genomes	South Asian	Sub	978	A=0.990	G=0.010
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.957	G=0.043
The Genome Aggregation Database	African	Sub	8714	A=0.804	G=0.196
The Genome Aggregation Database	American	Sub	838	A=0.940	G=0.060
The Genome Aggregation Database	East Asian	Sub	1618	A=0.994	G=0.006
The Genome Aggregation Database	Europe	Sub	18490	A=0.958	G=0.041
The Genome Aggregation Database	Global	Study-wide	29962	A=0.915	G=0.084
The Genome Aggregation Database	Other	Sub	302	A=0.990	G=0.010
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.891	G=0.108
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.947	G=0.053

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9597180	0.000141	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9597180