SNP Detail Info-rs9597202

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0098 (2946/29800,GnomAD)
G=0118 (3438/29116,TOPMED)
G=0110 (550/5008,1000G)
G=0061 (236/3854,ALSPAC)
G=0070 (259/3708,TWINSUK)

Position: chr13:55535037 (GRCh38.p7) (13q21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.55535037A>G
GRCh37.p13 chr 13	NC_000013.10:g.56109172A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.786	G=0.214
1000Genomes	American	Sub	694	A=0.900	G=0.100
1000Genomes	East Asian	Sub	1008	A=0.945	G=0.055
1000Genomes	Europe	Sub	1006	A=0.948	G=0.052
1000Genomes	Global	Study-wide	5008	A=0.890	G=0.110
1000Genomes	South Asian	Sub	978	A=0.910	G=0.090
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.939	G=0.061
The Genome Aggregation Database	African	Sub	8716	A=0.818	G=0.182
The Genome Aggregation Database	American	Sub	832	A=0.920	G=0.080
The Genome Aggregation Database	East Asian	Sub	1558	A=0.956	G=0.044
The Genome Aggregation Database	Europe	Sub	18392	A=0.933	G=0.066
The Genome Aggregation Database	Global	Study-wide	29800	A=0.901	G=0.098
The Genome Aggregation Database	Other	Sub	302	A=0.970	G=0.030
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.881	G=0.118
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.930	G=0.070

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9597202	0.000386	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9597202