rs9622147

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0079 (2384/29912,GnomAD)
T=0083 (2433/29114,TOPMED)
T=0053 (264/5008,1000G)
T=0097 (375/3854,ALSPAC)
T=0111 (412/3708,TWINSUK)
chr22:35107079 (GRCh38.p7) (22q12.3)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 22NC_000022.11:g.35107079C>T
GRCh37.p13 chr 22NC_000022.10:g.35503072C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.941T=0.059
1000GenomesAmericanSub694C=0.920T=0.080
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=0.900T=0.100
1000GenomesGlobalStudy-wide5008C=0.947T=0.053
1000GenomesSouth AsianSub978C=0.970T=0.030
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.903T=0.097
The Genome Aggregation DatabaseAfricanSub8716C=0.936T=0.064
The Genome Aggregation DatabaseAmericanSub838C=0.940T=0.060
The Genome Aggregation DatabaseEast AsianSub1618C=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18438C=0.906T=0.094
The Genome Aggregation DatabaseGlobalStudy-wide29912C=0.920T=0.079
The Genome Aggregation DatabaseOtherSub302C=0.880T=0.120
Trans-Omics for Precision MedicineGlobalStudy-wide29114C=0.916T=0.083
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.889T=0.111
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs96221470.000545alcohol dependence21314694

eQTL of rs9622147 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9622147 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr223549353835493618E070-9454