rs9640200

Homo sapiens
T>G
DPP6 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0309 (9275/29932,GnomAD)
T==0338 (9852/29118,TOPMED)
T==0238 (1191/5008,1000G)
T==0418 (1611/3854,ALSPAC)
T==0417 (1546/3708,TWINSUK)
chr7:154470566 (GRCh38.p7) (7q36.2)
ND
GWASdb2
1   publication(s)
See rs on genome
276 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.154470566T>G
DPP6 RefSeqGeneNG_033878.1:g.588233T>G

Gene: DPP6, dipeptidyl peptidase like 6(plus strand)

Molecule type Change Amino acid[Codon] SO Term
DPP6 transcript variant 3NM_001039350.2:c.N/AIntron Variant
DPP6 transcript variant 4NM_001290252.1:c.N/AIntron Variant
DPP6 transcript variant 5NM_001290253.1:c.N/AIntron Variant
DPP6 transcript variant 2NM_001936.4:c.N/AIntron Variant
DPP6 transcript variant 1NM_130797.3:c.N/AIntron Variant
DPP6 transcript variant X1XM_017011808.1:c.N/AIntron Variant
DPP6 transcript variant X2XM_017011809.1:c.N/AIntron Variant
DPP6 transcript variant X3XM_017011810.1:c.N/AIntron Variant
DPP6 transcript variant X4XM_017011811.1:c.N/AIntron Variant
DPP6 transcript variant X5XM_017011812.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.255G=0.745
1000GenomesAmericanSub694T=0.280G=0.720
1000GenomesEast AsianSub1008T=0.062G=0.938
1000GenomesEuropeSub1006T=0.412G=0.588
1000GenomesGlobalStudy-wide5008T=0.238G=0.762
1000GenomesSouth AsianSub978T=0.190G=0.810
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.418G=0.582
The Genome Aggregation DatabaseAfricanSub8694T=0.279G=0.721
The Genome Aggregation DatabaseAmericanSub836T=0.270G=0.730
The Genome Aggregation DatabaseEast AsianSub1620T=0.070G=0.930
The Genome Aggregation DatabaseEuropeSub18480T=0.344G=0.655
The Genome Aggregation DatabaseGlobalStudy-wide29932T=0.309G=0.690
The Genome Aggregation DatabaseOtherSub302T=0.450G=0.550
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.338G=0.661
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.417G=0.583
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs96402000.000103nicotine smoking19268276

eQTL of rs9640200 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9640200 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7154120248154120748E067-46903
chr7154120795154120872E067-46779
chr7154120987154121086E067-46565
chr7154121258154121381E067-46270
chr7154121445154121878E067-45773
chr7154121927154122048E067-45603
chr7154122121154122306E067-45345
chr7154122483154122669E067-44982
chr7154124766154125091E067-42560
chr7154127321154127361E067-40290
chr7154127449154127513E067-40138
chr7154127723154127808E067-39843
chr7154127910154127964E067-39687
chr7154128192154128336E067-39315
chr7154147627154147918E067-19733
chr7154148628154148865E067-18786
chr7154149095154149357E067-18294
chr7154166862154167023E067-628
chr7154169475154169530E0671824
chr7154169554154169594E0671903
chr7154169603154169665E0671952
chr7154172134154172203E0674483
chr7154172353154172536E0674702
chr7154178002154178180E06710351
chr7154178466154178518E06710815
chr7154181307154181403E06713656
chr7154181485154181781E06713834
chr7154182207154182316E06714556
chr7154182452154182625E06714801
chr7154120248154120748E068-46903
chr7154120795154120872E068-46779
chr7154120987154121086E068-46565
chr7154121258154121381E068-46270
chr7154121445154121878E068-45773
chr7154121927154122048E068-45603
chr7154122121154122306E068-45345
chr7154122483154122669E068-44982
chr7154124766154125091E068-42560
chr7154147627154147918E068-19733
chr7154148628154148865E068-18786
chr7154149095154149357E068-18294
chr7154164561154164621E068-3030
chr7154165078154165138E068-2513
chr7154166044154166152E068-1499
chr7154166862154167023E068-628
chr7154169231154169281E0681580
chr7154169475154169530E0681824
chr7154169554154169594E0681903
chr7154169603154169665E0681952
chr7154169733154169815E0682082
chr7154170784154170834E0683133
chr7154170945154171656E0683294
chr7154172134154172203E0684483
chr7154172353154172536E0684702
chr7154173520154173622E0685869
chr7154174060154174107E0686409
chr7154181132154181182E06813481
chr7154181307154181403E06813656
chr7154181485154181781E06813834
chr7154182207154182316E06814556
chr7154182452154182625E06814801
chr7154200948154201012E06833297
chr7154201063154201099E06833412
chr7154201177154201323E06833526
chr7154201353154201384E06833702
chr7154120248154120748E069-46903
chr7154120795154120872E069-46779
chr7154120987154121086E069-46565
chr7154121258154121381E069-46270
chr7154121445154121878E069-45773
chr7154121927154122048E069-45603
chr7154122121154122306E069-45345
chr7154122483154122669E069-44982
chr7154124766154125091E069-42560
chr7154126634154126779E069-40872
chr7154127321154127361E069-40290
chr7154127449154127513E069-40138
chr7154147627154147918E069-19733
chr7154148628154148865E069-18786
chr7154149095154149357E069-18294
chr7154160977154161040E069-6611
chr7154166044154166152E069-1499
chr7154166862154167023E069-628
chr7154172134154172203E0694483
chr7154172353154172536E0694702
chr7154173520154173622E0695869
chr7154181132154181182E06913481
chr7154181307154181403E06913656
chr7154181485154181781E06913834
chr7154182207154182316E06914556
chr7154182452154182625E06914801
chr7154120248154120748E070-46903
chr7154120795154120872E070-46779
chr7154120987154121086E070-46565
chr7154121258154121381E070-46270
chr7154121445154121878E070-45773
chr7154121927154122048E070-45603
chr7154122121154122306E070-45345
chr7154122483154122669E070-44982
chr7154124766154125091E070-42560
chr7154147627154147918E070-19733
chr7154148628154148865E070-18786
chr7154149095154149357E070-18294
chr7154172134154172203E0704483
chr7154172353154172536E0704702
chr7154177275154177345E0709624
chr7154178002154178180E07010351
chr7154178466154178518E07010815
chr7154179140154179289E07011489
chr7154180149154180213E07012498
chr7154181132154181182E07013481
chr7154181307154181403E07013656
chr7154181485154181781E07013834
chr7154182207154182316E07014556
chr7154182452154182625E07014801
chr7154183904154183954E07016253
chr7154184061154184146E07016410
chr7154184529154184581E07016878
chr7154120248154120748E071-46903
chr7154120795154120872E071-46779
chr7154120987154121086E071-46565
chr7154121258154121381E071-46270
chr7154121445154121878E071-45773
chr7154121927154122048E071-45603
chr7154122121154122306E071-45345
chr7154122483154122669E071-44982
chr7154124766154125091E071-42560
chr7154125924154125974E071-41677
chr7154126634154126779E071-40872
chr7154127321154127361E071-40290
chr7154127449154127513E071-40138
chr7154127723154127808E071-39843
chr7154127910154127964E071-39687
chr7154135726154136361E071-31290
chr7154139457154139784E071-27867
chr7154140019154140357E071-27294
chr7154147627154147918E071-19733
chr7154148628154148865E071-18786
chr7154149095154149357E071-18294
chr7154166044154166152E071-1499
chr7154166862154167023E071-628
chr7154169231154169281E0711580
chr7154169475154169530E0711824
chr7154169554154169594E0711903
chr7154169603154169665E0711952
chr7154169733154169815E0712082
chr7154170784154170834E0713133
chr7154170945154171656E0713294
chr7154172134154172203E0714483
chr7154172353154172536E0714702
chr7154173520154173622E0715869
chr7154178002154178180E07110351
chr7154181307154181403E07113656
chr7154181485154181781E07113834
chr7154182207154182316E07114556
chr7154182452154182625E07114801
chr7154120248154120748E072-46903
chr7154120795154120872E072-46779
chr7154120987154121086E072-46565
chr7154121258154121381E072-46270
chr7154126634154126779E072-40872
chr7154127321154127361E072-40290
chr7154127449154127513E072-40138
chr7154127723154127808E072-39843
chr7154127910154127964E072-39687
chr7154128192154128336E072-39315
chr7154147627154147918E072-19733
chr7154148628154148865E072-18786
chr7154149095154149357E072-18294
chr7154169231154169281E0721580
chr7154169475154169530E0721824
chr7154169554154169594E0721903
chr7154169603154169665E0721952
chr7154169733154169815E0722082
chr7154172134154172203E0724483
chr7154172353154172536E0724702
chr7154178002154178180E07210351
chr7154181132154181182E07213481
chr7154181307154181403E07213656
chr7154182207154182316E07214556
chr7154182452154182625E07214801
chr7154200948154201012E07233297
chr7154201063154201099E07233412
chr7154201177154201323E07233526
chr7154201353154201384E07233702
chr7154201463154201507E07233812
chr7154120795154120872E073-46779
chr7154120987154121086E073-46565
chr7154121258154121381E073-46270
chr7154121445154121878E073-45773
chr7154147627154147918E073-19733
chr7154148628154148865E073-18786
chr7154149095154149357E073-18294
chr7154166862154167023E073-628
chr7154181307154181403E07313656
chr7154181485154181781E07313834
chr7154120248154120748E074-46903
chr7154120795154120872E074-46779
chr7154120987154121086E074-46565
chr7154121258154121381E074-46270
chr7154121445154121878E074-45773
chr7154121927154122048E074-45603
chr7154122121154122306E074-45345
chr7154122483154122669E074-44982
chr7154124766154125091E074-42560
chr7154125924154125974E074-41677
chr7154126634154126779E074-40872
chr7154127321154127361E074-40290
chr7154127449154127513E074-40138
chr7154127723154127808E074-39843
chr7154127910154127964E074-39687
chr7154128192154128336E074-39315
chr7154129331154129388E074-38263
chr7154147164154147214E074-20437
chr7154147627154147918E074-19733
chr7154149095154149357E074-18294
chr7154166862154167023E074-628
chr7154169475154169530E0741824
chr7154169554154169594E0741903
chr7154169603154169665E0741952
chr7154169733154169815E0742082
chr7154170784154170834E0743133
chr7154170945154171656E0743294
chr7154172134154172203E0744483
chr7154172353154172536E0744702
chr7154173520154173622E0745869
chr7154174401154174491E0746750
chr7154178002154178180E07410351
chr7154181132154181182E07413481
chr7154181307154181403E07413656
chr7154181485154181781E07413834
chr7154182207154182316E07414556
chr7154182452154182625E07414801
chr7154196150154196343E07428499
chr7154196489154196544E07428838
chr7154121445154121878E081-45773
chr7154121927154122048E081-45603
chr7154122121154122306E081-45345
chr7154122483154122669E081-44982
chr7154124766154125091E081-42560
chr7154133543154133637E081-34014
chr7154134314154134670E081-32981
chr7154135066154135173E081-32478
chr7154135726154136361E081-31290
chr7154138022154138072E081-29579
chr7154138563154138662E081-28989
chr7154138754154138804E081-28847
chr7154139457154139784E081-27867
chr7154148628154148865E081-18786
chr7154149095154149357E081-18294
chr7154169475154169530E0811824
chr7154169554154169594E0811903
chr7154178002154178180E08110351
chr7154178466154178518E08110815
chr7154181132154181182E08113481
chr7154181307154181403E08113656
chr7154181485154181781E08113834
chr7154182207154182316E08114556
chr7154182452154182625E08114801
chr7154121445154121878E082-45773
chr7154121927154122048E082-45603
chr7154122121154122306E082-45345
chr7154130837154130896E082-36755
chr7154135066154135173E082-32478
chr7154135428154135493E082-32158
chr7154135726154136361E082-31290
chr7154138754154138804E082-28847
chr7154147627154147918E082-19733
chr7154148628154148865E082-18786
chr7154149095154149357E082-18294
chr7154181307154181403E08213656
chr7154181485154181781E08213834
chr7154182207154182316E08214556
chr7154182452154182625E08214801
chr7154201463154201507E08233812
chr7154201990154202060E08234339