rs9640465

Homo sapiens
C>T
SLC37A3 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0108 (3241/29964,GnomAD)
C==0104 (3042/29118,TOPMED)
C==0130 (653/5008,1000G)
C==0103 (396/3854,ALSPAC)
C==0100 (369/3708,TWINSUK)
chr7:140396357 (GRCh38.p7) (7q34)
AD
GWASdb2
1   publication(s)
See rs on genome
25 Enhancers around
30 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.140396357C>T
GRCh37.p13 chr 7NC_000007.13:g.140096157C>T

Gene: SLC37A3, solute carrier family 37 member 3(minus strand)

Molecule type Change Amino acid[Codon] SO Term
SLC37A3 transcript variant 3NM_001287498.1:c.N/AIntron Variant
SLC37A3 transcript variant 2NM_032295.3:c.N/AIntron Variant
SLC37A3 transcript variant 1NM_207113.2:c.N/AIntron Variant
SLC37A3 transcript variant X2XM_011516626.2:c.N/AIntron Variant
SLC37A3 transcript variant X3XM_011516627.2:c.N/AIntron Variant
SLC37A3 transcript variant X1XM_017012712.1:c.N/AIntron Variant
SLC37A3 transcript variant X4XM_017012713.1:c.N/AIntron Variant
SLC37A3 transcript variant X5XM_017012714.1:c.N/AIntron Variant
SLC37A3 transcript variant X6XM_017012715.1:c.N/AIntron Variant
SLC37A3 transcript variant X7XM_017012716.1:c.N/AIntron Variant
SLC37A3 transcript variant X8XM_017012717.1:c.N/AIntron Variant
SLC37A3 transcript variant X10XM_017012718.1:c.N/AIntron Variant
SLC37A3 transcript variant X9XR_927543.2:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.102T=0.898
1000GenomesAmericanSub694C=0.080T=0.920
1000GenomesEast AsianSub1008C=0.161T=0.839
1000GenomesEuropeSub1006C=0.096T=0.904
1000GenomesGlobalStudy-wide5008C=0.130T=0.870
1000GenomesSouth AsianSub978C=0.210T=0.790
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.103T=0.897
The Genome Aggregation DatabaseAfricanSub8726C=0.103T=0.897
The Genome Aggregation DatabaseAmericanSub838C=0.080T=0.920
The Genome Aggregation DatabaseEast AsianSub1614C=0.147T=0.853
The Genome Aggregation DatabaseEuropeSub18484C=0.107T=0.892
The Genome Aggregation DatabaseGlobalStudy-wide29964C=0.108T=0.891
The Genome Aggregation DatabaseOtherSub302C=0.170T=0.830
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.104T=0.895
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.100T=0.900
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs96404650.00028alcohol dependence20201924

eQTL of rs9640465 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9640465 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7140048981140049603E067-46554
chr7140048009140048563E068-47594
chr7140058233140058889E068-37268
chr7140089813140089863E069-6294
chr7140089993140090143E069-6014
chr7140090194140090327E069-5830
chr7140090331140091024E069-5133
chr7140048981140049603E070-46554
chr7140089662140089774E071-6383
chr7140089813140089863E071-6294
chr7140089993140090143E071-6014
chr7140090194140090327E071-5830
chr7140090331140091024E071-5133
chr7140091040140091234E071-4923
chr7140091518140091721E071-4436
chr7140091738140091904E071-4253
chr7140091923140092047E071-4110
chr7140096233140096639E07176
chr7140096710140096798E071553
chr7140097126140097166E071969
chr7140048981140049603E073-46554
chr7140085021140085065E073-11092
chr7140085068140085300E073-10857
chr7140048981140049603E074-46554
chr7140096710140096798E081553








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr7140097350140099043E0671193
chr7140135052140135222E06738895
chr7140135309140135412E06739152
chr7140135430140135834E06739273
chr7140097350140099043E0681193
chr7140135052140135222E06838895
chr7140135309140135412E06839152
chr7140097350140099043E0691193
chr7140135052140135222E06938895
chr7140135309140135412E06939152
chr7140097246140097331E0701089
chr7140097350140099043E0701193
chr7140135052140135222E07038895
chr7140135309140135412E07039152
chr7140097350140099043E0711193
chr7140135309140135412E07139152
chr7140135430140135834E07139273
chr7140097350140099043E0721193
chr7140135052140135222E07238895
chr7140135309140135412E07239152
chr7140097350140099043E0731193
chr7140135309140135412E07339152
chr7140135430140135834E07339273
chr7140097350140099043E0741193
chr7140103457140104903E0747300
chr7140097246140097331E0821089
chr7140097350140099043E0821193
chr7140135052140135222E08238895
chr7140135309140135412E08239152
chr7140135430140135834E08239273