SNP Detail Info-rs9656709

Organism: Homo sapiens

Alleles: A>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0452 (13526/29908,GnomAD)
C=0463 (13482/29118,TOPMED)
C=0414 (2075/5008,1000G)
C=0492 (1897/3854,ALSPAC)
C=0496 (1839/3708,TWINSUK)

Position: chr7:55656752 (GRCh38.p7) (7p11.2)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.55656752A>C
GRCh37.p13 chr 7	NC_000007.13:g.55724445A>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.557	C=0.443
1000Genomes	American	Sub	694	A=0.600	C=0.400
1000Genomes	East Asian	Sub	1008	A=0.715	C=0.285
1000Genomes	Europe	Sub	1006	A=0.445	C=0.555
1000Genomes	Global	Study-wide	5008	A=0.586	C=0.414
1000Genomes	South Asian	Sub	978	A=0.630	C=0.370
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.508	C=0.492
The Genome Aggregation Database	African	Sub	8702	A=0.559	C=0.441
The Genome Aggregation Database	American	Sub	836	A=0.600	C=0.400
The Genome Aggregation Database	East Asian	Sub	1612	A=0.732	C=0.268
The Genome Aggregation Database	Europe	Sub	18456	A=0.527	C=0.472
The Genome Aggregation Database	Global	Study-wide	29908	A=0.547	C=0.452
The Genome Aggregation Database	Other	Sub	302	A=0.340	C=0.660
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.537	C=0.463
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.504	C=0.496

PMID	Title	Author	Journal
23942779	A genome-wide association study of behavioral disinhibition.	McGue M	Behav Genet

SNP ID	p-value	Traits	Study
rs9656709	5E-06	alcohol dependence	23942779

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9656709