rs9668896

Homo sapiens
C>T
CRADD : 2KB Upstream Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0059 (1793/29966,GnomAD)
T=0074 (2178/29118,TOPMED)
T=0090 (449/5008,1000G)
T=0037 (142/3854,ALSPAC)
T=0040 (147/3708,TWINSUK)
chr12:93677236 (GRCh38.p7) (12q22)
ND
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 12NC_000012.12:g.93677236C>T
GRCh37.p13 chr 12NC_000012.11:g.94071012C>T
CRADD RefSeqGeneNG_032159.2:g.4862C>T

Gene: CRADD, CASP2 and RIPK1 domain containing adaptor with death domain(plus strand): 2KB Upstream Variant

Molecule type Change Amino acid[Codon] SO Term
CRADD transcript variant 2NM_001320099.1:c.N/AUpstream Transcript Variant
CRADD transcript variant 3NM_001320100.1:c.N/AUpstream Transcript Variant
CRADD transcript variant 4NM_001320101.1:c.N/AUpstream Transcript Variant
CRADD transcript variant 1NM_003805.4:c.N/AUpstream Transcript Variant
CRADD transcript variant 5NR_135147.1:n.N/AUpstream Transcript Variant
CRADD transcript variant X1XM_017020142.1:c.N/AUpstream Transcript Variant
CRADD transcript variant X3XM_017020143.1:c.N/AUpstream Transcript Variant
CRADD transcript variant X4XM_017020144.1:c.N/AUpstream Transcript Variant
CRADD transcript variant X7XM_017020145.1:c.N/AUpstream Transcript Variant
CRADD transcript variant X2XR_001748908.1:n.N/AUpstream Transcript Variant
CRADD transcript variant X5XR_001748909.1:n.N/AUpstream Transcript Variant
CRADD transcript variant X6XR_001748910.1:n.N/AUpstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.855T=0.145
1000GenomesAmericanSub694C=0.960T=0.040
1000GenomesEast AsianSub1008C=0.897T=0.103
1000GenomesEuropeSub1006C=0.960T=0.040
1000GenomesGlobalStudy-wide5008C=0.910T=0.090
1000GenomesSouth AsianSub978C=0.910T=0.090
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.963T=0.037
The Genome Aggregation DatabaseAfricanSub8710C=0.885T=0.115
The Genome Aggregation DatabaseAmericanSub838C=0.970T=0.030
The Genome Aggregation DatabaseEast AsianSub1618C=0.902T=0.098
The Genome Aggregation DatabaseEuropeSub18498C=0.968T=0.031
The Genome Aggregation DatabaseGlobalStudy-wide29966C=0.940T=0.059
The Genome Aggregation DatabaseOtherSub302C=0.930T=0.070
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.925T=0.074
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.960T=0.040
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs96688960.000000562Alcohol dependence20158304
rs96688960.00000279alcohol and nictotine co-dependence20158304

eQTL of rs9668896 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9668896 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr129407320694073318E0672194
chr129407333294073677E0672320
chr129410804494108783E06737032
chr129407320694073318E0682194
chr129407333294073677E0682320
chr129407647794077290E0685465
chr129407733494077507E0686322
chr129407853394078613E0687521
chr129410792794108005E06836915
chr129410804494108783E06837032
chr129412050994120705E06849497
chr129412077394120910E06849761
chr129407320694073318E0692194
chr129407333294073677E0692320
chr129403182994032221E070-38791
chr129403224294032311E070-38701
chr129403237794032494E070-38518
chr129403267394032996E070-38016
chr129403302994033111E070-37901
chr129403316494033204E070-37808
chr129403323694033299E070-37713
chr129403341694033506E070-37506
chr129403351894033677E070-37335
chr129405376994053841E070-17171
chr129405496394055256E070-15756
chr129405544894055548E070-15464
chr129405576894055880E070-15132
chr129407320694073318E0702194
chr129407333294073677E0702320
chr129412050994120705E07049497
chr129412077394120910E07049761
chr129412077394120910E07149761
chr129407333294073677E0722320
chr129409399494094138E07222982
chr129410792794108005E07236915
chr129410804494108783E07237032
chr129407333294073677E0732320
chr129409298394093903E07321971
chr129410583294106223E07334820
chr129407320694073318E0742194
chr129407333294073677E0742320
chr129410535394105526E07434341
chr129410792794108005E07436915
chr129410804494108783E07437032
chr129412050994120705E07449497
chr129412077394120910E07449761
chr129405496394055256E081-15756
chr129407320694073318E0812194
chr129407333294073677E0812320
chr129409173294091828E08120720
chr129409183594091937E08120823
chr129409202294092102E08121010
chr129407320694073318E0822194
chr129407333294073677E0822320










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr129407021794072884E0670
chr129407021794072884E0680
chr129407021794072884E0690
chr129407021794072884E0700
chr129407021794072884E0710
chr129407021794072884E0720
chr129407021794072884E0730
chr129407021794072884E0740
chr129407021794072884E0810
chr129407021794072884E0820