Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 12 | NC_000012.12:g.93677236C>T |
GRCh37.p13 chr 12 | NC_000012.11:g.94071012C>T |
CRADD RefSeqGene | NG_032159.2:g.4862C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
CRADD transcript variant 2 | NM_001320099.1:c. | N/A | Upstream Transcript Variant |
CRADD transcript variant 3 | NM_001320100.1:c. | N/A | Upstream Transcript Variant |
CRADD transcript variant 4 | NM_001320101.1:c. | N/A | Upstream Transcript Variant |
CRADD transcript variant 1 | NM_003805.4:c. | N/A | Upstream Transcript Variant |
CRADD transcript variant 5 | NR_135147.1:n. | N/A | Upstream Transcript Variant |
CRADD transcript variant X1 | XM_017020142.1:c. | N/A | Upstream Transcript Variant |
CRADD transcript variant X3 | XM_017020143.1:c. | N/A | Upstream Transcript Variant |
CRADD transcript variant X4 | XM_017020144.1:c. | N/A | Upstream Transcript Variant |
CRADD transcript variant X7 | XM_017020145.1:c. | N/A | Upstream Transcript Variant |
CRADD transcript variant X2 | XR_001748908.1:n. | N/A | Upstream Transcript Variant |
CRADD transcript variant X5 | XR_001748909.1:n. | N/A | Upstream Transcript Variant |
CRADD transcript variant X6 | XR_001748910.1:n. | N/A | Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.855 | T=0.145 |
1000Genomes | American | Sub | 694 | C=0.960 | T=0.040 |
1000Genomes | East Asian | Sub | 1008 | C=0.897 | T=0.103 |
1000Genomes | Europe | Sub | 1006 | C=0.960 | T=0.040 |
1000Genomes | Global | Study-wide | 5008 | C=0.910 | T=0.090 |
1000Genomes | South Asian | Sub | 978 | C=0.910 | T=0.090 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.963 | T=0.037 |
The Genome Aggregation Database | African | Sub | 8710 | C=0.885 | T=0.115 |
The Genome Aggregation Database | American | Sub | 838 | C=0.970 | T=0.030 |
The Genome Aggregation Database | East Asian | Sub | 1618 | C=0.902 | T=0.098 |
The Genome Aggregation Database | Europe | Sub | 18498 | C=0.968 | T=0.031 |
The Genome Aggregation Database | Global | Study-wide | 29966 | C=0.940 | T=0.059 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.930 | T=0.070 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.925 | T=0.074 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.960 | T=0.040 |
PMID | Title | Author | Journal |
---|---|---|---|
20158304 | A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations. | Lind PA | Twin Res Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs9668896 | 0.000000562 | Alcohol dependence | 20158304 |
rs9668896 | 0.00000279 | alcohol and nictotine co-dependence | 20158304 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr12 | 94073206 | 94073318 | E067 | 2194 |
chr12 | 94073332 | 94073677 | E067 | 2320 |
chr12 | 94108044 | 94108783 | E067 | 37032 |
chr12 | 94073206 | 94073318 | E068 | 2194 |
chr12 | 94073332 | 94073677 | E068 | 2320 |
chr12 | 94076477 | 94077290 | E068 | 5465 |
chr12 | 94077334 | 94077507 | E068 | 6322 |
chr12 | 94078533 | 94078613 | E068 | 7521 |
chr12 | 94107927 | 94108005 | E068 | 36915 |
chr12 | 94108044 | 94108783 | E068 | 37032 |
chr12 | 94120509 | 94120705 | E068 | 49497 |
chr12 | 94120773 | 94120910 | E068 | 49761 |
chr12 | 94073206 | 94073318 | E069 | 2194 |
chr12 | 94073332 | 94073677 | E069 | 2320 |
chr12 | 94031829 | 94032221 | E070 | -38791 |
chr12 | 94032242 | 94032311 | E070 | -38701 |
chr12 | 94032377 | 94032494 | E070 | -38518 |
chr12 | 94032673 | 94032996 | E070 | -38016 |
chr12 | 94033029 | 94033111 | E070 | -37901 |
chr12 | 94033164 | 94033204 | E070 | -37808 |
chr12 | 94033236 | 94033299 | E070 | -37713 |
chr12 | 94033416 | 94033506 | E070 | -37506 |
chr12 | 94033518 | 94033677 | E070 | -37335 |
chr12 | 94053769 | 94053841 | E070 | -17171 |
chr12 | 94054963 | 94055256 | E070 | -15756 |
chr12 | 94055448 | 94055548 | E070 | -15464 |
chr12 | 94055768 | 94055880 | E070 | -15132 |
chr12 | 94073206 | 94073318 | E070 | 2194 |
chr12 | 94073332 | 94073677 | E070 | 2320 |
chr12 | 94120509 | 94120705 | E070 | 49497 |
chr12 | 94120773 | 94120910 | E070 | 49761 |
chr12 | 94120773 | 94120910 | E071 | 49761 |
chr12 | 94073332 | 94073677 | E072 | 2320 |
chr12 | 94093994 | 94094138 | E072 | 22982 |
chr12 | 94107927 | 94108005 | E072 | 36915 |
chr12 | 94108044 | 94108783 | E072 | 37032 |
chr12 | 94073332 | 94073677 | E073 | 2320 |
chr12 | 94092983 | 94093903 | E073 | 21971 |
chr12 | 94105832 | 94106223 | E073 | 34820 |
chr12 | 94073206 | 94073318 | E074 | 2194 |
chr12 | 94073332 | 94073677 | E074 | 2320 |
chr12 | 94105353 | 94105526 | E074 | 34341 |
chr12 | 94107927 | 94108005 | E074 | 36915 |
chr12 | 94108044 | 94108783 | E074 | 37032 |
chr12 | 94120509 | 94120705 | E074 | 49497 |
chr12 | 94120773 | 94120910 | E074 | 49761 |
chr12 | 94054963 | 94055256 | E081 | -15756 |
chr12 | 94073206 | 94073318 | E081 | 2194 |
chr12 | 94073332 | 94073677 | E081 | 2320 |
chr12 | 94091732 | 94091828 | E081 | 20720 |
chr12 | 94091835 | 94091937 | E081 | 20823 |
chr12 | 94092022 | 94092102 | E081 | 21010 |
chr12 | 94073206 | 94073318 | E082 | 2194 |
chr12 | 94073332 | 94073677 | E082 | 2320 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr12 | 94070217 | 94072884 | E067 | 0 |
chr12 | 94070217 | 94072884 | E068 | 0 |
chr12 | 94070217 | 94072884 | E069 | 0 |
chr12 | 94070217 | 94072884 | E070 | 0 |
chr12 | 94070217 | 94072884 | E071 | 0 |
chr12 | 94070217 | 94072884 | E072 | 0 |
chr12 | 94070217 | 94072884 | E073 | 0 |
chr12 | 94070217 | 94072884 | E074 | 0 |
chr12 | 94070217 | 94072884 | E081 | 0 |
chr12 | 94070217 | 94072884 | E082 | 0 |