SNP Detail Info-rs9690922

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0258 (7739/29952,GnomAD)
G=0295 (8600/29118,TOPMED)
G=0242 (1210/5008,1000G)
G=0177 (684/3854,ALSPAC)
G=0175 (648/3708,TWINSUK)

Position: chr7:83339206 (GRCh38.p7) (7q21.11)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.83339206A>G
GRCh37.p13 chr 7	NC_000007.13:g.82968522A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.530	G=0.470
1000Genomes	American	Sub	694	A=0.830	G=0.170
1000Genomes	East Asian	Sub	1008	A=0.865	G=0.135
1000Genomes	Europe	Sub	1006	A=0.823	G=0.177
1000Genomes	Global	Study-wide	5008	A=0.758	G=0.242
1000Genomes	South Asian	Sub	978	A=0.840	G=0.160
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.823	G=0.177
The Genome Aggregation Database	African	Sub	8708	A=0.557	G=0.443
The Genome Aggregation Database	American	Sub	836	A=0.850	G=0.150
The Genome Aggregation Database	East Asian	Sub	1618	A=0.850	G=0.150
The Genome Aggregation Database	Europe	Sub	18488	A=0.815	G=0.184
The Genome Aggregation Database	Global	Study-wide	29952	A=0.741	G=0.258
The Genome Aggregation Database	Other	Sub	302	A=0.650	G=0.350
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.704	G=0.295
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.825	G=0.175

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9690922	0.00045	alcohol dependence(Early Onset)	20201924
rs9690922	0.00081	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9690922