SNP Detail Info-rs9782914

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

WDR64 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0190 (5700/29888,GnomAD)
C=0231 (6726/29116,TOPMED)
C=0225 (1126/5008,1000G)
C=0137 (527/3854,ALSPAC)
C=0135 (499/3708,TWINSUK)

Position: chr1:241728933 (GRCh38.p7) (1q43)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 11 Enhancers around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.241728933T>C
GRCh37.p13 chr 1	NC_000001.10:g.241892235T>C

Molecule type	Change	Amino acid[Codon]	SO Term
WDR64 transcript	NM_144625.4:c.	N/A	Intron Variant
WDR64 transcript variant X1	XM_006711736.3:c.	N/A	Intron Variant
WDR64 transcript variant X3	XM_011544085.2:c.	N/A	Intron Variant
WDR64 transcript variant X4	XM_011544086.2:c.	N/A	Intron Variant
WDR64 transcript variant X4	XM_011544087.2:c.	N/A	Intron Variant
WDR64 transcript variant X5	XM_011544091.1:c.	N/A	Intron Variant
WDR64 transcript variant X6	XM_011544092.2:c.	N/A	Intron Variant
WDR64 transcript variant X2	XM_017000315.1:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.608	C=0.392
1000Genomes	American	Sub	694	T=0.830	C=0.170
1000Genomes	East Asian	Sub	1008	T=0.793	C=0.207
1000Genomes	Europe	Sub	1006	T=0.862	C=0.138
1000Genomes	Global	Study-wide	5008	T=0.775	C=0.225
1000Genomes	South Asian	Sub	978	T=0.850	C=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.863	C=0.137
The Genome Aggregation Database	African	Sub	8688	T=0.672	C=0.328
The Genome Aggregation Database	American	Sub	838	T=0.870	C=0.130
The Genome Aggregation Database	East Asian	Sub	1618	T=0.802	C=0.198
The Genome Aggregation Database	Europe	Sub	18444	T=0.871	C=0.128
The Genome Aggregation Database	Global	Study-wide	29888	T=0.809	C=0.190
The Genome Aggregation Database	Other	Sub	300	T=0.810	C=0.190
Trans-Omics for Precision Medicine	Global	Study-wide	29116	T=0.769	C=0.231
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.865	C=0.135

PMID	Title	Author	Journal
23942779	A genome-wide association study of behavioral disinhibition.	McGue M	Behav Genet

SNP ID	p-value	Traits	Study
rs9782914	8E-06	alcohol dependence	23942779

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	241913129	241913243	E067	20894
chr1	241913290	241913896	E067	21055
chr1	241914970	241915175	E067	22735
chr1	241915209	241915265	E067	22974
chr1	241913290	241913896	E068	21055
chr1	241914970	241915175	E069	22735
chr1	241877743	241877909	E070	-14326
chr1	241878073	241878168	E070	-14067
chr1	241914970	241915175	E071	22735
chr1	241878816	241878899	E073	-13336
chr1	241908296	241908648	E073	16061

rs9782914