rs9805786

Homo sapiens
G>T
SPATA13 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G==0377 (11283/29884,GnomAD)
G==0356 (10382/29116,TOPMED)
G==0356 (1783/5008,1000G)
G==0408 (1572/3854,ALSPAC)
G==0418 (1551/3708,TWINSUK)
chr13:24084217 (GRCh38.p7) (13q12.12)
AD
GWASCatalog | GWASdb2
2   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.24084217G>T
GRCh37.p13 chr 13NC_000013.10:g.24658356G>T

Gene: SPATA13, spermatogenesis associated 13(plus strand)

Molecule type Change Amino acid[Codon] SO Term
SPATA13 transcript variant 3NM_001286792.1:c.N/AIntron Variant
SPATA13 transcript variant 1NM_001166271.2:c.N/AGenic Upstream Transcript Variant
SPATA13 transcript variant 4NM_001286793.1:c.N/AGenic Upstream Transcript Variant
SPATA13 transcript variant 5NM_001286794.1:c.N/AGenic Upstream Transcript Variant
SPATA13 transcript variant 6NM_001286795.1:c.N/AGenic Upstream Transcript Variant
SPATA13 transcript variant 2NM_153023.3:c.N/AGenic Upstream Transcript Variant
SPATA13 transcript variant 7NR_104595.1:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.221T=0.779
1000GenomesAmericanSub694G=0.410T=0.590
1000GenomesEast AsianSub1008G=0.471T=0.529
1000GenomesEuropeSub1006G=0.382T=0.618
1000GenomesGlobalStudy-wide5008G=0.356T=0.644
1000GenomesSouth AsianSub978G=0.360T=0.640
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.408T=0.592
The Genome Aggregation DatabaseAfricanSub8698G=0.249T=0.751
The Genome Aggregation DatabaseAmericanSub832G=0.410T=0.590
The Genome Aggregation DatabaseEast AsianSub1616G=0.449T=0.551
The Genome Aggregation DatabaseEuropeSub18438G=0.431T=0.568
The Genome Aggregation DatabaseGlobalStudy-wide29884G=0.377T=0.622
The Genome Aggregation DatabaseOtherSub300G=0.320T=0.680
Trans-Omics for Precision MedicineGlobalStudy-wide29116G=0.356T=0.643
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.418T=0.582
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res
22064162Genome-wide association study of comorbid depressive syndrome and alcohol dependence.Edwards ACPsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs98057867.00E-06alcohol dependence22064162
rs98057860.00045alcohol dependence(early age of onset)20201924
rs98057860.00086alcohol dependence20201924

eQTL of rs9805786 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9805786 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr132461037424610546E067-47810
chr132461058724610713E067-47643
chr132461072124610842E067-47514
chr132461246224613749E067-44607
chr132461382224613932E067-44424
chr132461429424614373E067-43983
chr132461456324614610E067-43746
chr132461490824615345E067-43011
chr132461542124615764E067-42592
chr132461595224616063E067-42293
chr132461609624616269E067-42087
chr132462356724623617E067-34739
chr132462366724623731E067-34625
chr132462384224623984E067-34372
chr132462406124624115E067-34241
chr132462436624625311E067-33045
chr132462533324625498E067-32858
chr132462559824625699E067-32657
chr132462583524625920E067-32436
chr132462594524626023E067-32333
chr132462646424628359E067-29997
chr132463317024633220E067-25136
chr132463337324633670E067-24686
chr132463381524633945E067-24411
chr132463722424637318E067-21038
chr132463739324637515E067-20841
chr132463755224637999E067-20357
chr132463801924638355E067-20001
chr132463841324638458E067-19898
chr132463845924638670E067-19686
chr132463867124638834E067-19522
chr132463891324638991E067-19365
chr132464062324640785E067-17571
chr132464087524641440E067-16916
chr132464880824648886E067-9470
chr132464891424649123E067-9233
chr132464935424650841E067-7515
chr132465089224651090E067-7266
chr132466097324661076E0672617
chr132466139124661441E0673035
chr132466148524661596E0673129
chr132466183624661994E0673480
chr132466203224662163E0673676
chr132466605324666464E0677697
chr132468058424680705E06722228
chr132468070724680836E06722351
chr132468094124681150E06722585
chr132468139524681467E06723039
chr132468428924684479E06725933
chr132468632024686466E06727964
chr132468653924687203E06728183
chr132469374824694389E06735392
chr132469441924694593E06736063
chr132461382224613932E068-44424
chr132461429424614373E068-43983
chr132461456324614610E068-43746
chr132461490824615345E068-43011
chr132461542124615764E068-42592
chr132461595224616063E068-42293
chr132461609624616269E068-42087
chr132462356724623617E068-34739
chr132462366724623731E068-34625
chr132462384224623984E068-34372
chr132462406124624115E068-34241
chr132462533324625498E068-32858
chr132462559824625699E068-32657
chr132462583524625920E068-32436
chr132462594524626023E068-32333
chr132462602824626163E068-32193
chr132462625724626380E068-31976
chr132462646424628359E068-29997
chr132462849424628548E068-29808
chr132463381524633945E068-24411
chr132463672324636779E068-21577
chr132463689224636960E068-21396
chr132463703324637100E068-21256
chr132463722424637318E068-21038
chr132463739324637515E068-20841
chr132463755224637999E068-20357
chr132463801924638355E068-20001
chr132463841324638458E068-19898
chr132463845924638670E068-19686
chr132463867124638834E068-19522
chr132463891324638991E068-19365
chr132464087524641440E068-16916
chr132464157224641634E068-16722
chr132464760324647720E068-10636
chr132464777224647822E068-10534
chr132464782724647931E068-10425
chr132464820424648254E068-10102
chr132464880824648886E068-9470
chr132464891424649123E068-9233
chr132464935424650841E068-7515
chr132465089224651090E068-7266
chr132465605724656101E068-2255
chr132465614924656193E068-2163
chr132465622824656278E068-2078
chr132465633324656389E068-1967
chr132465713324657196E068-1160
chr132465735124658853E0680
chr132465886724659070E068511
chr132465914524659189E068789
chr132465925524659320E068899
chr132465978724659857E0681431
chr132465995324660164E0681597
chr132466018824660282E0681832
chr132466046024660588E0682104
chr132466066624660806E0682310
chr132466085724660937E0682501
chr132466097324661076E0682617
chr132466139124661441E0683035
chr132466148524661596E0683129
chr132466183624661994E0683480
chr132466203224662163E0683676
chr132466233624662433E0683980
chr132466488224664922E0686526
chr132466525024665300E0686894
chr132466545524665505E0687099
chr132466555324665638E0687197
chr132466605324666464E0687697
chr132466650624666573E0688150
chr132466665524666742E0688299
chr132467093124671056E06812575
chr132467169424672234E06813338
chr132467999024680050E06821634
chr132468009124680141E06821735
chr132468058424680705E06822228
chr132468070724680836E06822351
chr132468094124681150E06822585
chr132468178324681833E06823427
chr132468214024682190E06823784
chr132468223324682492E06823877
chr132468256024682738E06824204
chr132468397724684048E06825621
chr132468416324684249E06825807
chr132468632024686466E06827964
chr132468653924687203E06828183
chr132469360324693690E06835247
chr132469374824694389E06835392
chr132469441924694593E06836063
chr132461382224613932E069-44424
chr132461429424614373E069-43983
chr132461456324614610E069-43746
chr132461490824615345E069-43011
chr132461542124615764E069-42592
chr132461595224616063E069-42293
chr132461609624616269E069-42087
chr132461658724616770E069-41586
chr132461690624617200E069-41156
chr132461977524619869E069-38487
chr132461988024619942E069-38414
chr132462356724623617E069-34739
chr132462366724623731E069-34625
chr132462384224623984E069-34372
chr132462436624625311E069-33045
chr132462533324625498E069-32858
chr132462559824625699E069-32657
chr132462583524625920E069-32436
chr132462594524626023E069-32333
chr132462602824626163E069-32193
chr132462625724626380E069-31976
chr132462646424628359E069-29997
chr132462849424628548E069-29808
chr132463059324630722E069-27634
chr132463091224630990E069-27366
chr132463689224636960E069-21396
chr132463703324637100E069-21256
chr132463722424637318E069-21038
chr132463739324637515E069-20841
chr132463801924638355E069-20001
chr132463841324638458E069-19898
chr132463845924638670E069-19686
chr132463867124638834E069-19522
chr132464087524641440E069-16916
chr132464157224641634E069-16722
chr132464880824648886E069-9470
chr132464891424649123E069-9233
chr132464935424650841E069-7515
chr132465089224651090E069-7266
chr132465735124658853E0690
chr132465978724659857E0691431
chr132465995324660164E0691597
chr132466018824660282E0691832
chr132466046024660588E0692104
chr132466066624660806E0692310
chr132466085724660937E0692501
chr132466097324661076E0692617
chr132466139124661441E0693035
chr132466148524661596E0693129
chr132466183624661994E0693480
chr132466203224662163E0693676
chr132466525024665300E0696894
chr132466545524665505E0697099
chr132466555324665638E0697197
chr132466665524666742E0698299
chr132466682224667083E0698466
chr132466712624667183E0698770
chr132467999024680050E06921634
chr132468009124680141E06921735
chr132468058424680705E06922228
chr132468070724680836E06922351
chr132468094124681150E06922585
chr132468122224681294E06922866
chr132468131724681370E06922961
chr132468139524681467E06923039
chr132468154924681618E06923193
chr132468178324681833E06923427
chr132468214024682190E06923784
chr132468223324682492E06923877
chr132468397724684048E06925621
chr132468416324684249E06925807
chr132468428924684479E06925933
chr132468593324686192E06927577
chr132468632024686466E06927964
chr132468653924687203E06928183
chr132469360324693690E06935247
chr132469374824694389E06935392
chr132469441924694593E06936063
chr132461246224613749E070-44607
chr132461382224613932E070-44424
chr132461429424614373E070-43983
chr132462436624625311E070-33045
chr132462646424628359E070-29997
chr132463317024633220E070-25136
chr132463337324633670E070-24686
chr132463689224636960E070-21396
chr132463703324637100E070-21256
chr132463722424637318E070-21038
chr132463739324637515E070-20841
chr132463755224637999E070-20357
chr132463801924638355E070-20001
chr132464087524641440E070-16916
chr132464157224641634E070-16722
chr132464935424650841E070-7515
chr132465089224651090E070-7266
chr132465563524655851E070-2505
chr132465605724656101E070-2255
chr132465614924656193E070-2163
chr132465622824656278E070-2078
chr132465633324656389E070-1967
chr132465660424656688E070-1668
chr132465713324657196E070-1160
chr132465886724659070E070511
chr132465914524659189E070789
chr132465925524659320E070899
chr132465978724659857E0701431
chr132465995324660164E0701597
chr132466018824660282E0701832
chr132466046024660588E0702104
chr132466066624660806E0702310
chr132466085724660937E0702501
chr132466097324661076E0702617
chr132466139124661441E0703035
chr132466148524661596E0703129
chr132466183624661994E0703480
chr132466203224662163E0703676
chr132466233624662433E0703980
chr132466268124662731E0704325
chr132466334524663395E0704989
chr132469374824694389E07035392
chr132461382224613932E071-44424
chr132461429424614373E071-43983
chr132461456324614610E071-43746
chr132461490824615345E071-43011
chr132461542124615764E071-42592
chr132461595224616063E071-42293
chr132461609624616269E071-42087
chr132461658724616770E071-41586
chr132461725624617380E071-40976
chr132461749124617610E071-40746
chr132461774024618026E071-40330
chr132461813124618192E071-40164
chr132462356724623617E071-34739
chr132462366724623731E071-34625
chr132462384224623984E071-34372
chr132462406124624115E071-34241
chr132462436624625311E071-33045
chr132462533324625498E071-32858
chr132462559824625699E071-32657
chr132462583524625920E071-32436
chr132462594524626023E071-32333
chr132462602824626163E071-32193
chr132462625724626380E071-31976
chr132462646424628359E071-29997
chr132462849424628548E071-29808
chr132463287424632967E071-25389
chr132463381524633945E071-24411
chr132463672324636779E071-21577
chr132463689224636960E071-21396
chr132463703324637100E071-21256
chr132463722424637318E071-21038
chr132463739324637515E071-20841
chr132463755224637999E071-20357
chr132463801924638355E071-20001
chr132463841324638458E071-19898
chr132463845924638670E071-19686
chr132464087524641440E071-16916
chr132464880824648886E071-9470
chr132464891424649123E071-9233
chr132464935424650841E071-7515
chr132465089224651090E071-7266
chr132465978724659857E0711431
chr132465995324660164E0711597
chr132466018824660282E0711832
chr132466046024660588E0712104
chr132466066624660806E0712310
chr132466085724660937E0712501
chr132466097324661076E0712617
chr132466139124661441E0713035
chr132466148524661596E0713129
chr132466183624661994E0713480
chr132466203224662163E0713676
chr132466525024665300E0716894
chr132466545524665505E0717099
chr132466555324665638E0717197
chr132467999024680050E07121634
chr132468009124680141E07121735
chr132468058424680705E07122228
chr132468070724680836E07122351
chr132468094124681150E07122585
chr132468178324681833E07123427
chr132468214024682190E07123784
chr132468223324682492E07123877
chr132468397724684048E07125621
chr132468416324684249E07125807
chr132468428924684479E07125933
chr132468632024686466E07127964
chr132468653924687203E07128183
chr132469360324693690E07135247
chr132469374824694389E07135392
chr132470377624703942E07145420
chr132470413424704192E07145778
chr132470431324705155E07145957
chr132461246224613749E072-44607
chr132461382224613932E072-44424
chr132461429424614373E072-43983
chr132461456324614610E072-43746
chr132461490824615345E072-43011
chr132461542124615764E072-42592
chr132461595224616063E072-42293
chr132461609624616269E072-42087
chr132461658724616770E072-41586
chr132461690624617200E072-41156
chr132461725624617380E072-40976
chr132461749124617610E072-40746
chr132461774024618026E072-40330
chr132461813124618192E072-40164
chr132461988024619942E072-38414
chr132462356724623617E072-34739
chr132462366724623731E072-34625
chr132462384224623984E072-34372
chr132462406124624115E072-34241
chr132462436624625311E072-33045
chr132462533324625498E072-32858
chr132462559824625699E072-32657
chr132462583524625920E072-32436
chr132462594524626023E072-32333
chr132462602824626163E072-32193
chr132462625724626380E072-31976
chr132462646424628359E072-29997
chr132462849424628548E072-29808
chr132463274924632820E072-25536
chr132463287424632967E072-25389
chr132463317024633220E072-25136
chr132463337324633670E072-24686
chr132463381524633945E072-24411
chr132463739324637515E072-20841
chr132463755224637999E072-20357
chr132463801924638355E072-20001
chr132463841324638458E072-19898
chr132463845924638670E072-19686
chr132464087524641440E072-16916
chr132464157224641634E072-16722
chr132464880824648886E072-9470
chr132464891424649123E072-9233
chr132464935424650841E072-7515
chr132465089224651090E072-7266
chr132465978724659857E0721431
chr132465995324660164E0721597
chr132466018824660282E0721832
chr132466046024660588E0722104
chr132466066624660806E0722310
chr132466085724660937E0722501
chr132466097324661076E0722617
chr132466139124661441E0723035
chr132466148524661596E0723129
chr132466183624661994E0723480
chr132466203224662163E0723676
chr132466233624662433E0723980
chr132466819824668296E0729842
chr132467983924679879E07221483
chr132467999024680050E07221634
chr132468009124680141E07221735
chr132468058424680705E07222228
chr132468070724680836E07222351
chr132468094124681150E07222585
chr132468122224681294E07222866
chr132468131724681370E07222961
chr132468139524681467E07223039
chr132468154924681618E07223193
chr132468397724684048E07225621
chr132468416324684249E07225807
chr132468428924684479E07225933
chr132468632024686466E07227964
chr132468653924687203E07228183
chr132469360324693690E07235247
chr132469374824694389E07235392
chr132469441924694593E07236063
chr132470431324705155E07245957
chr132461246224613749E073-44607
chr132461382224613932E073-44424
chr132461429424614373E073-43983
chr132461456324614610E073-43746
chr132461490824615345E073-43011
chr132462366724623731E073-34625
chr132462436624625311E073-33045
chr132462533324625498E073-32858
chr132462559824625699E073-32657
chr132462583524625920E073-32436
chr132462594524626023E073-32333
chr132462646424628359E073-29997
chr132463317024633220E073-25136
chr132463337324633670E073-24686
chr132463381524633945E073-24411
chr132463618924636239E073-22117
chr132463672324636779E073-21577
chr132463689224636960E073-21396
chr132463703324637100E073-21256
chr132463722424637318E073-21038
chr132463739324637515E073-20841
chr132463755224637999E073-20357
chr132463801924638355E073-20001
chr132464062324640785E073-17571
chr132465995324660164E0731597
chr132466018824660282E0731832
chr132466046024660588E0732104
chr132466066624660806E0732310
chr132466085724660937E0732501
chr132466097324661076E0732617
chr132466139124661441E0733035
chr132466148524661596E0733129
chr132466183624661994E0733480
chr132466203224662163E0733676
chr132468632024686466E07327964
chr132468653924687203E07328183
chr132461246224613749E074-44607
chr132461382224613932E074-44424
chr132461429424614373E074-43983
chr132461456324614610E074-43746
chr132461490824615345E074-43011
chr132461542124615764E074-42592
chr132461595224616063E074-42293
chr132461609624616269E074-42087
chr132461658724616770E074-41586
chr132461774024618026E074-40330
chr132461813124618192E074-40164
chr132461988024619942E074-38414
chr132462356724623617E074-34739
chr132462366724623731E074-34625
chr132462384224623984E074-34372
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