rs9807163

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0052 (1583/29970,GnomAD)
A=0050 (1456/29118,TOPMED)
A=0063 (315/5008,1000G)
A=0049 (187/3854,ALSPAC)
A=0051 (190/3708,TWINSUK)
chr18:77687439 (GRCh38.p7) (18q23)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.77687439C>A
GRCh37.p13 chr 18NC_000018.9:g.75399395C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.974A=0.026
1000GenomesAmericanSub694C=0.960A=0.040
1000GenomesEast AsianSub1008C=0.900A=0.100
1000GenomesEuropeSub1006C=0.929A=0.071
1000GenomesGlobalStudy-wide5008C=0.937A=0.063
1000GenomesSouth AsianSub978C=0.920A=0.080
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.951A=0.049
The Genome Aggregation DatabaseAfricanSub8724C=0.968A=0.032
The Genome Aggregation DatabaseAmericanSub836C=0.970A=0.030
The Genome Aggregation DatabaseEast AsianSub1620C=0.906A=0.094
The Genome Aggregation DatabaseEuropeSub18488C=0.940A=0.059
The Genome Aggregation DatabaseGlobalStudy-wide29970C=0.947A=0.052
The Genome Aggregation DatabaseOtherSub302C=0.930A=0.070
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.950A=0.050
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.949A=0.051
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98071630.000206alcohol dependence20201924

eQTL of rs9807163 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9807163 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr187536272575363273E081-36122
chr187536894875369028E081-30367
chr187537444275374485E081-24910
chr187537455975374652E081-24743
chr187537467175374711E081-24684
chr187538347975383753E081-15642
chr187538391075384356E081-15039
chr187538895275389289E081-10106
chr187538963375389767E081-9628