SNP Detail Info-rs9810313

Organism: Homo sapiens

Alleles: G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0229 (6861/29884,GnomAD)
T=0317 (9244/29118,TOPMED)
T=0241 (1205/5008,1000G)
T=0104 (402/3854,ALSPAC)
T=0109 (404/3708,TWINSUK)

Position: chr3:164870914 (GRCh38.p7) (3q26.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 2 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.164870914G>T
GRCh37.p13 chr 3	NC_000003.11:g.164588702G>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.384	T=0.616
1000Genomes	American	Sub	694	G=0.900	T=0.100
1000Genomes	East Asian	Sub	1008	G=0.906	T=0.094
1000Genomes	Europe	Sub	1006	G=0.904	T=0.096
1000Genomes	Global	Study-wide	5008	G=0.759	T=0.241
1000Genomes	South Asian	Sub	978	G=0.870	T=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.896	T=0.104
The Genome Aggregation Database	African	Sub	8682	G=0.430	T=0.570
The Genome Aggregation Database	American	Sub	832	G=0.920	T=0.080
The Genome Aggregation Database	East Asian	Sub	1620	G=0.899	T=0.101
The Genome Aggregation Database	Europe	Sub	18448	G=0.910	T=0.089
The Genome Aggregation Database	Global	Study-wide	29884	G=0.770	T=0.229
The Genome Aggregation Database	Other	Sub	302	G=0.900	T=0.100
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.682	T=0.317
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.891	T=0.109

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend
23089632	A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.	Wang JC	Mol Psychiatry

SNP ID	p-value	Traits	Study
rs9810313	6.95E-09	alcohol dependence (age at onset)	24962325
rs9810313	0.00000414	alcohol dependence	23089632

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9810313