rs9815607

Homo sapiens
G>A
TRPC1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0354 (10595/29852,GnomAD)
A=0414 (12064/29118,TOPMED)
A=0364 (1822/5008,1000G)
A=0198 (764/3854,ALSPAC)
A=0211 (783/3708,TWINSUK)
chr3:142791506 (GRCh38.p7) (3q23)
AD
GWASdb2
1   publication(s)
See rs on genome
5 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.142791506G>A
GRCh37.p13 chr 3NC_000003.11:g.142510348G>A
TRPC1 RefSeqGeneNG_030369.1:g.72083G>A

Gene: TRPC1, transient receptor potential cation channel subfamily C member 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
TRPC1 transcript variant 1NM_001251845.1:c.N/AIntron Variant
TRPC1 transcript variant 2NM_003304.4:c.N/AIntron Variant
TRPC1 transcript variant X3XM_005247738.3:c.N/AIntron Variant
TRPC1 transcript variant X3XM_005247739.2:c.N/AIntron Variant
TRPC1 transcript variant X1XM_017007121.1:c.N/AIntron Variant
TRPC1 transcript variant X2XM_017007122.1:c.N/AIntron Variant
TRPC1 transcript variant X5XR_001740242.1:n.N/AIntron Variant
TRPC1 transcript variant X6XR_001740243.1:n.N/AIntron Variant
TRPC1 transcript variant X7XR_001740244.1:n.N/AIntron Variant
TRPC1 transcript variant X8XR_001740245.1:n.N/AIntron Variant
TRPC1 transcript variant X5XR_001740246.1:n.N/AIntron Variant
TRPC1 transcript variant X9XR_241506.3:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.264A=0.736
1000GenomesAmericanSub694G=0.810A=0.190
1000GenomesEast AsianSub1008G=0.690A=0.310
1000GenomesEuropeSub1006G=0.775A=0.225
1000GenomesGlobalStudy-wide5008G=0.636A=0.364
1000GenomesSouth AsianSub978G=0.810A=0.190
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.802A=0.198
The Genome Aggregation DatabaseAfricanSub8698G=0.326A=0.674
The Genome Aggregation DatabaseAmericanSub834G=0.800A=0.200
The Genome Aggregation DatabaseEast AsianSub1594G=0.634A=0.366
The Genome Aggregation DatabaseEuropeSub18424G=0.785A=0.214
The Genome Aggregation DatabaseGlobalStudy-wide29852G=0.645A=0.354
The Genome Aggregation DatabaseOtherSub302G=0.870A=0.130
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.585A=0.414
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.789A=0.211
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98156070.000795alcohol dependence20201924

eQTL of rs9815607 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9815607 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3142527005142527380E06716657
chr3142527005142527380E06816657
chr3142527005142527380E06916657
chr3142527005142527380E07216657
chr3142527005142527380E07416657