rs9822442

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0157 (4719/29950,GnomAD)
C=0175 (5121/29118,TOPMED)
C=0141 (706/5008,1000G)
C=0177 (682/3854,ALSPAC)
C=0181 (671/3708,TWINSUK)
chr3:153309700 (GRCh38.p7) (3q25.2)
AD
GWASdb2
1   publication(s)
See rs on genome
7 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.153309700T>C
GRCh37.p13 chr 3NC_000003.11:g.153027489T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.792C=0.208
1000GenomesAmericanSub694T=0.890C=0.110
1000GenomesEast AsianSub1008T=0.922C=0.078
1000GenomesEuropeSub1006T=0.838C=0.162
1000GenomesGlobalStudy-wide5008T=0.859C=0.141
1000GenomesSouth AsianSub978T=0.890C=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.823C=0.177
The Genome Aggregation DatabaseAfricanSub8718T=0.794C=0.206
The Genome Aggregation DatabaseAmericanSub836T=0.880C=0.120
The Genome Aggregation DatabaseEast AsianSub1616T=0.939C=0.061
The Genome Aggregation DatabaseEuropeSub18478T=0.855C=0.144
The Genome Aggregation DatabaseGlobalStudy-wide29950T=0.842C=0.157
The Genome Aggregation DatabaseOtherSub302T=0.830C=0.170
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.824C=0.175
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.819C=0.181
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98224420.000461alcohol dependence20201924

eQTL of rs9822442 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9822442 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3153023054153023348E068-4141
chr3153023567153023618E068-3871
chr3153001877153002613E069-24876
chr3153001877153002613E071-24876
chr3153003798153003895E071-23594
chr3153056388153056623E07128899
chr3153003798153003895E074-23594