SNP Detail Info-rs982313

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0092 (1938/20890,GnomAD)
T=0060 (225/3775,1000G)
T=0103 (381/3708,TWINSUK)
T=0100 (288/2889,ALSPAC)

Position: chrX:15128650 (GRCh38.p7) (Xp22.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.15128650C>T
GRCh37.p13 chr X	NC_000023.10:g.15146772C>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	C=0.914	T=0.086
1000Genomes	American	Sub	524	C=0.930	T=0.070
1000Genomes	East Asian	Sub	764	C=1.000	T=0.000
1000Genomes	Europe	Sub	766	C=0.910	T=0.090
1000Genomes	Global	Study-wide	3775	C=0.940	T=0.060
1000Genomes	South Asian	Sub	718	C=0.960	T=0.040
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	C=0.900	T=0.100
The Genome Aggregation Database	African	Sub	5901	C=0.908	T=0.092
The Genome Aggregation Database	American	Sub	616	C=0.960	T=0.040
The Genome Aggregation Database	East Asian	Sub	1032	C=1.000	T=0.000
The Genome Aggregation Database	Europe	Sub	13154	C=0.897	T=0.102
The Genome Aggregation Database	Global	Study-wide	20890	C=0.907	T=0.092
The Genome Aggregation Database	Other	Sub	187	C=0.890	T=0.110
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.897	T=0.103

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs982313	0.00098	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs982313