rs9825310

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0397 (11901/29934,GnomAD)
A=0363 (10593/29118,TOPMED)
A=0303 (1516/5008,1000G)
A=0461 (1776/3854,ALSPAC)
A=0485 (1800/3708,TWINSUK)
chr3:32198627 (GRCh38.p7) (3p22.3)
AD
GWASdb2 | GWASCatalog
2   publication(s)
See rs on genome
15 Enhancers around
9 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.32198627G>A
GRCh37.p13 chr 3NC_000003.11:g.32240119G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.828A=0.172
1000GenomesAmericanSub694G=0.560A=0.440
1000GenomesEast AsianSub1008G=0.803A=0.197
1000GenomesEuropeSub1006G=0.528A=0.472
1000GenomesGlobalStudy-wide5008G=0.697A=0.303
1000GenomesSouth AsianSub978G=0.680A=0.320
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.539A=0.461
The Genome Aggregation DatabaseAfricanSub8704G=0.788A=0.212
The Genome Aggregation DatabaseAmericanSub838G=0.570A=0.430
The Genome Aggregation DatabaseEast AsianSub1620G=0.797A=0.203
The Genome Aggregation DatabaseEuropeSub18470G=0.499A=0.500
The Genome Aggregation DatabaseGlobalStudy-wide29934G=0.602A=0.397
The Genome Aggregation DatabaseOtherSub302G=0.610A=0.390
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.636A=0.363
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.515A=0.485
PMID Title Author Journal
22004471Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.Frank JAddict Biol
27153397Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation.Do CAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs98253108E-06alcohol dependence22004471

eQTL of rs9825310 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9825310 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr33221923832219806E067-20313
chr33219016732190375E068-49744
chr33221867932219219E073-20900
chr33221923832219806E073-20313
chr33219016732190375E081-49744
chr33219528932195756E081-44363
chr33219578732195908E081-44211
chr33219598932196069E081-44050
chr33219674032196921E081-43198
chr33219702532197075E081-43044
chr33219765632197814E081-42305
chr33219797432198024E081-42095
chr33219914832199646E081-40473
chr33219982332199873E081-40246
chr33219914832199646E082-40473





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr33227935432281586E06839235
chr33227935432281586E06939235
chr33227935432281586E07139235
chr33227935432281586E07239235
chr33227912932279347E07339010
chr33227935432281586E07339235
chr33227912932279347E07439010
chr33227935432281586E07439235
chr33227935432281586E08239235