rs9825394

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0136 (4099/29952,GnomAD)
C=0174 (5072/29118,TOPMED)
C=0148 (741/5008,1000G)
C=0104 (400/3854,ALSPAC)
C=0106 (394/3708,TWINSUK)
chr3:164834344 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164834344T>C
GRCh37.p13 chr 3NC_000003.11:g.164552132T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.722C=0.278
1000GenomesAmericanSub694T=0.920C=0.080
1000GenomesEast AsianSub1008T=0.905C=0.095
1000GenomesEuropeSub1006T=0.907C=0.093
1000GenomesGlobalStudy-wide5008T=0.852C=0.148
1000GenomesSouth AsianSub978T=0.870C=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.896C=0.104
The Genome Aggregation DatabaseAfricanSub8702T=0.744C=0.256
The Genome Aggregation DatabaseAmericanSub838T=0.940C=0.060
The Genome Aggregation DatabaseEast AsianSub1620T=0.898C=0.102
The Genome Aggregation DatabaseEuropeSub18490T=0.911C=0.088
The Genome Aggregation DatabaseGlobalStudy-wide29952T=0.863C=0.136
The Genome Aggregation DatabaseOtherSub302T=0.910C=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.825C=0.174
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.894C=0.106
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs98253948.06E-08alcohol dependence (age at onset)24962325

eQTL of rs9825394 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9825394 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.