SNP Detail Info-rs9826966

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LOC105376976 : 2KB Upstream Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0228 (6801/29834,GnomAD)
A==0171 (5001/29118,TOPMED)
A==0290 (1453/5008,1000G)
A==0267 (1029/3854,ALSPAC)
A==0266 (986/3708,TWINSUK)

Position: chr3:18696304 (GRCh38.p7) (3p24.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.18696304A>G
GRCh37.p13 chr 3	NC_000003.11:g.18737796A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105376976 transcript variant X2	XR_001740423.1:n.	N/A	Upstream Transcript Variant
LOC105376976 transcript variant X1	XR_940635.2:n.	N/A	N/A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.015	G=0.985
1000Genomes	American	Sub	694	A=0.250	G=0.750
1000Genomes	East Asian	Sub	1008	A=0.498	G=0.502
1000Genomes	Europe	Sub	1006	A=0.297	G=0.703
1000Genomes	Global	Study-wide	5008	A=0.290	G=0.710
1000Genomes	South Asian	Sub	978	A=0.470	G=0.530
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.267	G=0.733
The Genome Aggregation Database	African	Sub	8710	A=0.051	G=0.949
The Genome Aggregation Database	American	Sub	830	A=0.250	G=0.750
The Genome Aggregation Database	East Asian	Sub	1600	A=0.508	G=0.492
The Genome Aggregation Database	Europe	Sub	18392	A=0.283	G=0.716
The Genome Aggregation Database	Global	Study-wide	29834	A=0.228	G=0.772
The Genome Aggregation Database	Other	Sub	302	A=0.390	G=0.610
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.171	G=0.828
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.266	G=0.734

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9826966	0.00019	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9826966