rs982915

Homo sapiens
G>A
SLC26A4 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G==0275 (8229/29918,GnomAD)
G==0297 (8653/29118,TOPMED)
G==0210 (1053/5008,1000G)
G==0291 (1121/3854,ALSPAC)
G==0296 (1096/3708,TWINSUK)
chr7:107699466 (GRCh38.p7) (7q22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
86 Enhancers around
18 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.107699466G>A
GRCh37.p13 chr 7NC_000007.13:g.107339911G>A
SLC26A4 RefSeqGeneNG_008489.1:g.43832G>A

Gene: SLC26A4, solute carrier family 26 member 4(plus strand)

Molecule type Change Amino acid[Codon] SO Term
SLC26A4 transcriptNM_000441.1:c.N/AIntron Variant
SLC26A4 transcript variant X1XM_005250425.2:c.N/AIntron Variant
SLC26A4 transcript variant X2XM_017012318.1:c.N/AIntron Variant
SLC26A4 transcript variant X3XM_006716025.3:c.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.337A=0.663
1000GenomesAmericanSub694G=0.240A=0.760
1000GenomesEast AsianSub1008G=0.012A=0.988
1000GenomesEuropeSub1006G=0.291A=0.709
1000GenomesGlobalStudy-wide5008G=0.210A=0.790
1000GenomesSouth AsianSub978G=0.140A=0.860
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.291A=0.709
The Genome Aggregation DatabaseAfricanSub8698G=0.333A=0.667
The Genome Aggregation DatabaseAmericanSub838G=0.180A=0.820
The Genome Aggregation DatabaseEast AsianSub1618G=0.009A=0.991
The Genome Aggregation DatabaseEuropeSub18466G=0.274A=0.725
The Genome Aggregation DatabaseGlobalStudy-wide29918G=0.275A=0.724
The Genome Aggregation DatabaseOtherSub298G=0.300A=0.700
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.297A=0.702
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.296A=0.704
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs9829151.27E-05alcohol consumption23743675

eQTL of rs982915 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs982915 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7107333486107333578E067-6333
chr7107333824107334105E067-5806
chr7107334175107334517E067-5394
chr7107334625107335182E067-4729
chr7107335233107335327E067-4584
chr7107383023107383099E06743112
chr7107386669107386772E06746758
chr7107387624107387709E06747713
chr7107387798107387880E06747887
chr7107333486107333578E068-6333
chr7107333824107334105E068-5806
chr7107334175107334517E068-5394
chr7107334625107335182E068-4729
chr7107335233107335327E068-4584
chr7107341168107341256E0681257
chr7107341276107341497E0681365
chr7107382753107382818E06842842
chr7107386669107386772E06846758
chr7107387624107387709E06847713
chr7107387798107387880E06847887
chr7107387932107387978E06848021
chr7107388350107388400E06848439
chr7107333486107333578E069-6333
chr7107333824107334105E069-5806
chr7107334175107334517E069-5394
chr7107334625107335182E069-4729
chr7107335233107335327E069-4584
chr7107335529107335618E069-4293
chr7107337294107337374E069-2537
chr7107337495107337545E069-2366
chr7107383023107383099E06943112
chr7107386669107386772E06946758
chr7107387624107387709E06947713
chr7107387798107387880E06947887
chr7107387932107387978E06948021
chr7107332948107333294E070-6617
chr7107333486107333578E070-6333
chr7107333824107334105E070-5806
chr7107334175107334517E070-5394
chr7107334625107335182E070-4729
chr7107335233107335327E070-4584
chr7107335529107335618E070-4293
chr7107335644107335829E070-4082
chr7107337495107337545E070-2366
chr7107337639107338679E070-1232
chr7107383023107383099E07043112
chr7107386669107386772E07046758
chr7107387798107387880E07047887
chr7107387932107387978E07048021
chr7107388350107388400E07048439
chr7107332129107332230E071-7681
chr7107332267107332442E071-7469
chr7107332948107333294E071-6617
chr7107333486107333578E071-6333
chr7107333824107334105E071-5806
chr7107335233107335327E071-4584
chr7107337495107337545E071-2366
chr7107337639107338679E071-1232
chr7107383023107383099E07143112
chr7107333824107334105E072-5806
chr7107334175107334517E072-5394
chr7107334625107335182E072-4729
chr7107337639107338679E072-1232
chr7107383023107383099E07243112
chr7107386669107386772E07246758
chr7107333824107334105E073-5806
chr7107334175107334517E073-5394
chr7107334625107335182E073-4729
chr7107335233107335327E073-4584
chr7107337639107338679E073-1232
chr7107333486107333578E074-6333
chr7107333824107334105E074-5806
chr7107334175107334517E074-5394
chr7107335233107335327E074-4584
chr7107333824107334105E081-5806
chr7107337639107338679E081-1232
chr7107338996107339076E081-835
chr7107334175107334517E082-5394
chr7107334625107335182E082-4729
chr7107337294107337374E082-2537
chr7107337495107337545E082-2366
chr7107337639107338679E082-1232
chr7107386669107386772E08246758
chr7107387798107387880E08247887
chr7107387932107387978E08248021
chr7107388350107388400E08248439










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr7107300841107302741E067-37170
chr7107383118107385525E06743207
chr7107300841107302741E068-37170
chr7107383118107385525E06843207
chr7107300841107302741E069-37170
chr7107383118107385525E06943207
chr7107383118107385525E07043207
chr7107300841107302741E071-37170
chr7107383118107385525E07143207
chr7107300841107302741E072-37170
chr7107383118107385525E07243207
chr7107300841107302741E073-37170
chr7107383118107385525E07343207
chr7107300841107302741E074-37170
chr7107383118107385525E07443207
chr7107383118107385525E08143207
chr7107300841107302741E082-37170
chr7107383118107385525E08243207