SNP Detail Info-rs9830200

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0164 (4108/25044,GnomAD)
G==0147 (736/5008,1000G)
G==0119 (458/3854,ALSPAC)
G==0120 (445/3708,TWINSUK)

Position: chr3:164849971 (GRCh38.p7) (3q26.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.164849971G>A
GRCh37.p13 chr 3	NC_000003.11:g.164567759G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.210	A=0.790
1000Genomes	American	Sub	694	G=0.080	A=0.920
1000Genomes	East Asian	Sub	1008	G=0.097	A=0.903
1000Genomes	Europe	Sub	1006	G=0.112	A=0.888
1000Genomes	Global	Study-wide	5008	G=0.147	A=0.853
1000Genomes	South Asian	Sub	978	G=0.200	A=0.800
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.119	A=0.881
The Genome Aggregation Database	African	Sub	7826	G=0.256	A=0.744
The Genome Aggregation Database	American	Sub	490	G=0.100	A=0.900
The Genome Aggregation Database	East Asian	Sub	1498	G=0.126	A=0.874
The Genome Aggregation Database	Europe	Sub	14978	G=0.122	A=0.877
The Genome Aggregation Database	Global	Study-wide	25044	G=0.164	A=0.836
The Genome Aggregation Database	Other	Sub	252	G=0.130	A=0.870
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.120	A=0.880

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend

SNP ID	p-value	Traits	Study
rs9830200	2.91E-08	alcohol dependence (age at onset)	24962325

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9830200