rs9832587

Homo sapiens
T>A / T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0023 (709/29906,GnomAD)
C=0032 (937/29118,TOPMED)
C=0020 (102/5008,1000G)
C=0001 (2/3854,ALSPAC)
C=0000 (1/3708,TWINSUK)
chr3:103115956 (GRCh38.p7) (3q13.11)
AD
GWASdb2
1   publication(s)
See rs on genome
80 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.103115956T>A
GRCh38.p7 chr 3NC_000003.12:g.103115956T>C
GRCh37.p13 chr 3NC_000003.11:g.102834800T>A
GRCh37.p13 chr 3NC_000003.11:g.102834800T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.927C=0.073
1000GenomesAmericanSub694T=0.990C=0.010
1000GenomesEast AsianSub1008T=1.000C=0.000
1000GenomesEuropeSub1006T=0.998C=0.002
1000GenomesGlobalStudy-wide5008T=0.980C=0.020
1000GenomesSouth AsianSub978T=1.000C=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.999C=0.001
The Genome Aggregation DatabaseAfricanSub8708T=0.920C=0.080
The Genome Aggregation DatabaseAmericanSub838T=1.000C=0.00,
The Genome Aggregation DatabaseEast AsianSub1620T=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18438T=0.999C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29906T=0.976C=0.023
The Genome Aggregation DatabaseOtherSub302T=1.000C=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.967C=0.032
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=1.000C=0.000
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98325870.000565alcohol dependence20201924

eQTL of rs9832587 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9832587 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr34791947147919521E067-28461
chr34793065247930714E067-17268
chr34793161247931918E067-16064
chr34793454547934595E067-13387
chr34793477447934948E067-13034
chr34799775847997834E06749776
chr34791649347916700E068-31282
chr34791718347917259E068-30723
chr34791947147919521E068-28461
chr34793065247930714E068-17268
chr34793477447934948E068-13034
chr34795105447951368E0683072
chr34795170547951765E0683723
chr34798180847981897E06833826
chr34798198247982044E06834000
chr34799775847997834E06849776
chr34790987347910114E069-37868
chr34791445447914661E069-33321
chr34791511847915241E069-32741
chr34791605847916108E069-31874
chr34791947147919521E069-28461
chr34793065247930714E069-17268
chr34793454547934595E069-13387
chr34793477447934948E069-13034
chr34799612647996466E06948144
chr34799677147996906E06948789
chr34793477447934948E070-13034
chr34799775847997834E07049776
chr34789901647899071E071-48911
chr34790987347910114E071-37868
chr34791649347916700E071-31282
chr34791894147919006E071-28976
chr34791947147919521E071-28461
chr34793454547934595E071-13387
chr34793477447934948E071-13034
chr34794120447941282E071-6700
chr34799126447991349E07143282
chr34799612647996466E07148144
chr34799677147996906E07148789
chr34799775847997834E07149776
chr34790987347910114E072-37868
chr34793065247930714E072-17268
chr34793815147938605E072-9377
chr34795105447951368E0723072
chr34795170547951765E0723723
chr34798198247982044E07234000
chr34799775847997834E07249776
chr34791445447914661E073-33321
chr34791649347916700E073-31282
chr34791718347917259E073-30723
chr34793454547934595E073-13387
chr34793477447934948E073-13034
chr34795170547951765E0733723
chr34795230747952677E0734325
chr34790987347910114E074-37868
chr34791511847915241E074-32741
chr34791535847915439E074-32543
chr34791551647915599E074-32383
chr34791649347916700E074-31282
chr34791894147919006E074-28976
chr34791947147919521E074-28461
chr34793065247930714E074-17268
chr34793103847931088E074-16894
chr34793161247931918E074-16064
chr34793193347932869E074-15113
chr34793297347933282E074-14700
chr34793815147938605E074-9377
chr34799612647996466E07448144
chr34799677147996906E07448789
chr34799775847997834E07449776
chr34792612247926499E081-21483
chr34792735447927406E081-20576
chr34792905247929107E081-18875
chr34793065247930714E081-17268
chr34793297347933282E081-14700
chr34793454547934595E081-13387
chr34793477447934948E081-13034
chr34794285947943023E081-4959
chr34794383147943885E081-4097
chr34793477447934948E082-13034