rs9835056

Homo sapiens
T>C
LOC107986098 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0087 (2629/29964,GnomAD)
C=0096 (2797/29118,TOPMED)
C=0115 (574/5008,1000G)
C=0063 (243/3854,ALSPAC)
C=0050 (186/3708,TWINSUK)
chr3:73130169 (GRCh38.p7) (3p13)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
3 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.73130169T>C
GRCh37.p13 chr 3NC_000003.11:g.73179320T>C

Gene: LOC107986098, uncharacterized LOC107986098(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC107986098 transcriptXR_001740754.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.853C=0.147
1000GenomesAmericanSub694T=0.840C=0.160
1000GenomesEast AsianSub1008T=0.810C=0.190
1000GenomesEuropeSub1006T=0.947C=0.053
1000GenomesGlobalStudy-wide5008T=0.885C=0.115
1000GenomesSouth AsianSub978T=0.980C=0.020
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.937C=0.063
The Genome Aggregation DatabaseAfricanSub8716T=0.878C=0.122
The Genome Aggregation DatabaseAmericanSub838T=0.820C=0.180
The Genome Aggregation DatabaseEast AsianSub1622T=0.822C=0.178
The Genome Aggregation DatabaseEuropeSub18486T=0.939C=0.060
The Genome Aggregation DatabaseGlobalStudy-wide29964T=0.912C=0.087
The Genome Aggregation DatabaseOtherSub302T=0.980C=0.020
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.903C=0.096
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.950C=0.050
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98350560.0009alcohol dependence20201924

eQTL of rs9835056 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9835056 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr37314993873150768E068-28552
chr37315082173150873E068-28447
chr37315094373151362E068-27958
chr37314993873150768E069-28552
chr37314993873150768E070-28552
chr37316395473164149E070-15171
chr37316418873164254E070-15066
chr37316428773164367E070-14953
chr37318610373186359E0706783
chr37314993873150768E072-28552
chr37313499573135945E073-43375
chr37314993873150768E081-28552
chr37316500673165257E081-14063






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr37315982973160278E068-19042
chr37315982973160278E069-19042
chr37315982973160278E074-19042