rs983579

Homo sapiens
G>A / G>C
None
Check p-value
SNV (Single Nucleotide Variation)
A=0056 (1686/29936,GnomAD)
A=0052 (1514/29118,TOPMED)
A=0030 (148/5008,1000G)
chr12:32991864 (GRCh38.p7) (12p11.21)
ND
GWASdb2
1   publication(s)
See rs on genome
11 Enhancers around
20 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 12NC_000012.12:g.32991864G>A
GRCh38.p7 chr 12NC_000012.12:g.32991864G>C
GRCh37.p13 chr 12NC_000012.11:g.33144798G>A
GRCh37.p13 chr 12NC_000012.11:g.33144798G>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.995A=0.005
1000GenomesAmericanSub694G=0.960A=0.040
1000GenomesEast AsianSub1008G=1.000A=0.000
1000GenomesEuropeSub1006G=0.912A=0.088
1000GenomesGlobalStudy-wide5008G=0.970A=0.030
1000GenomesSouth AsianSub978G=0.980A=0.020
The Genome Aggregation DatabaseAfricanSub8718G=0.987A=0.013
The Genome Aggregation DatabaseAmericanSub830G=0.950A=0.050
The Genome Aggregation DatabaseEast AsianSub1622G=1.000A=0.000
The Genome Aggregation DatabaseEuropeSub18464G=0.919A=0.080
The Genome Aggregation DatabaseGlobalStudy-wide29936G=0.943A=0.056
The Genome Aggregation DatabaseOtherSub302G=0.870A=0.130
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.948A=0.052
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs9835791.35E-05nicotine smoking19268276

eQTL of rs983579 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs983579 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr123417397434174028E06732469
chr123417693534176996E06735430
chr123417437134174542E06832866
chr123417437134174542E06932866
chr123417693534176996E07035430
chr123417693534176996E07235430
chr123417437134174542E07332866
chr123417647334176579E07334968
chr123417437134174542E07432866
chr123417647334176579E08134968
chr123417843434178484E08236929









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr123417466034175833E06733155
chr123417587834176069E06734373
chr123417466034175833E06833155
chr123417587834176069E06834373
chr123417466034175833E06933155
chr123417587834176069E06934373
chr123417466034175833E07033155
chr123417587834176069E07034373
chr123417466034175833E07133155
chr123417587834176069E07134373
chr123417466034175833E07233155
chr123417587834176069E07234373
chr123417466034175833E07333155
chr123417587834176069E07334373
chr123417466034175833E07433155
chr123417587834176069E07434373
chr123417466034175833E08133155
chr123417587834176069E08134373
chr123417466034175833E08233155
chr123417587834176069E08234373