SNP Detail Info-rs9835842

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0135 (4071/29954,GnomAD)
G=0125 (3663/29118,TOPMED)
G=0135 (674/5008,1000G)
G=0172 (662/3854,ALSPAC)
G=0170 (632/3708,TWINSUK)

Position: chr3:176313899 (GRCh38.p7) (3q26.32)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.176313899A>G
GRCh37.p13 chr 3	NC_000003.11:g.176031687A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.950	G=0.050
1000Genomes	American	Sub	694	A=0.870	G=0.130
1000Genomes	East Asian	Sub	1008	A=0.788	G=0.212
1000Genomes	Europe	Sub	1006	A=0.845	G=0.155
1000Genomes	Global	Study-wide	5008	A=0.865	G=0.135
1000Genomes	South Asian	Sub	978	A=0.850	G=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.828	G=0.172
The Genome Aggregation Database	African	Sub	8728	A=0.943	G=0.057
The Genome Aggregation Database	American	Sub	838	A=0.880	G=0.120
The Genome Aggregation Database	East Asian	Sub	1618	A=0.786	G=0.214
The Genome Aggregation Database	Europe	Sub	18468	A=0.833	G=0.166
The Genome Aggregation Database	Global	Study-wide	29954	A=0.864	G=0.135
The Genome Aggregation Database	Other	Sub	302	A=0.810	G=0.190
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.874	G=0.125
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.830	G=0.170

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9835842	0.00019	alcohol dependence(early age of onset)	20201924
rs9835842	0.00094	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9835842