rs9835842

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0135 (4071/29954,GnomAD)
G=0125 (3663/29118,TOPMED)
G=0135 (674/5008,1000G)
G=0172 (662/3854,ALSPAC)
G=0170 (632/3708,TWINSUK)
chr3:176313899 (GRCh38.p7) (3q26.32)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.176313899A>G
GRCh37.p13 chr 3NC_000003.11:g.176031687A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.950G=0.050
1000GenomesAmericanSub694A=0.870G=0.130
1000GenomesEast AsianSub1008A=0.788G=0.212
1000GenomesEuropeSub1006A=0.845G=0.155
1000GenomesGlobalStudy-wide5008A=0.865G=0.135
1000GenomesSouth AsianSub978A=0.850G=0.150
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.828G=0.172
The Genome Aggregation DatabaseAfricanSub8728A=0.943G=0.057
The Genome Aggregation DatabaseAmericanSub838A=0.880G=0.120
The Genome Aggregation DatabaseEast AsianSub1618A=0.786G=0.214
The Genome Aggregation DatabaseEuropeSub18468A=0.833G=0.166
The Genome Aggregation DatabaseGlobalStudy-wide29954A=0.864G=0.135
The Genome Aggregation DatabaseOtherSub302A=0.810G=0.190
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.874G=0.125
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.830G=0.170
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98358420.00019alcohol dependence(early age of onset)20201924
rs98358420.00094alcohol dependence20201924

eQTL of rs9835842 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9835842 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3176018599176018716E070-12971