rs9839267

Homo sapiens
T>A / T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0152 (4576/29958,GnomAD)
G=0181 (906/5008,1000G)
G=0116 (446/3854,ALSPAC)
G=0111 (413/3708,TWINSUK)
chr3:42291132 (GRCh38.p7) (3p22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
46 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.42291132T>A
GRCh38.p7 chr 3NC_000003.12:g.42291132T>G
GRCh37.p13 chr 3NC_000003.11:g.42332624T>A
GRCh37.p13 chr 3NC_000003.11:g.42332624T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.719G=0.281
1000GenomesAmericanSub694T=0.830G=0.170
1000GenomesEast AsianSub1008T=0.851G=0.149
1000GenomesEuropeSub1006T=0.901G=0.099
1000GenomesGlobalStudy-wide5008T=0.819G=0.181
1000GenomesSouth AsianSub978T=0.830G=0.170
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.884G=0.116
The Genome Aggregation DatabaseAfricanSub8716T=0.746G=0.254
The Genome Aggregation DatabaseAmericanSub836T=0.830G=0.170
The Genome Aggregation DatabaseEast AsianSub1610T=0.845G=0.155
The Genome Aggregation DatabaseEuropeSub18494T=0.894G=0.106
The Genome Aggregation DatabaseGlobalStudy-wide29958T=0.847G=0.152
The Genome Aggregation DatabaseOtherSub302T=0.970G=0.030
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.889G=0.111
PMID Title Author Journal
23422394Genetic analysis of a population heavy drinking phenotype identifies risk variants in whites.Hamidovic AJ Clin Psychopharmacol

P-Value

SNP ID p-value Traits Study
rs98392673.05E-05alcohol consumption (Heavy)23422394

eQTL of rs9839267 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9839267 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr31697217116972221E067-43184
chr31698371316983793E067-31612
chr31698384116983889E067-31516
chr31698396216984038E067-31367
chr31698419116984242E067-31163
chr31698442216984578E067-30827
chr31698476316984855E067-30550
chr31704791517048320E06732510
chr31705324317053293E06737838
chr31705335517053405E06737950
chr31705359417053658E06738189
chr31705465617054916E06739251
chr31705522917055377E06739824
chr31698384116983889E068-31516
chr31698396216984038E068-31367
chr31698419116984242E068-31163
chr31703591417036006E06820509
chr31705431317054363E06838908
chr31705465617054916E06839251
chr31705522917055377E06839824
chr31705465617054916E07039251
chr31704015417040346E07124749
chr31698384116983889E072-31516
chr31705324317053293E07237838
chr31705335517053405E07237950
chr31705359417053658E07238189
chr31697134916971399E073-44006
chr31703186617031956E07416461
chr31705324317053293E07437838
chr31705335517053405E07437950
chr31698152416981766E081-33639
chr31698226616983174E081-32231
chr31698371316983793E081-31612
chr31698384116983889E081-31516
chr31698396216984038E081-31367
chr31703591417036006E08120509
chr31696961316969663E082-45742
chr31697019316970233E082-45172
chr31697035816970554E082-44851
chr31698396216984038E082-31367
chr31698419116984242E082-31163
chr31698442216984578E082-30827
chr31703591417036006E08220509
chr31703645717036517E08221052
chr31703682817036965E08221423
chr31703713817037425E08221733