rs9844985

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0341 (9246/27042,GnomAD)
A==0429 (2146/5008,1000G)
C=0279 (1074/3854,ALSPAC)
C=0265 (981/3708,TWINSUK)
chr3:117163885 (GRCh38.p7) (3q13.31)
AD
GWASCatalog
1   publication(s)
See rs on genome
26 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.117163885A>C
GRCh37.p13 chr 3NC_000003.11:g.116882732A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.250C=0.750
1000GenomesAmericanSub694A=0.470C=0.530
1000GenomesEast AsianSub1008A=0.468C=0.532
1000GenomesEuropeSub1006A=0.536C=0.464
1000GenomesGlobalStudy-wide5008A=0.429C=0.571
1000GenomesSouth AsianSub978A=0.490C=0.510
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.721C=0.279
The Genome Aggregation DatabaseAfricanSub8376A=0.394C=0.606
The Genome Aggregation DatabaseAmericanSub540A=0.590C=0.410
The Genome Aggregation DatabaseEast AsianSub1486A=0.738C=0.262
The Genome Aggregation DatabaseEuropeSub16354A=0.787C=0.212
The Genome Aggregation DatabaseGlobalStudy-wide27042A=0.658C=0.341
The Genome Aggregation DatabaseOtherSub286A=0.690C=0.310
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.735C=0.265
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs98449852E-06alcohol dependence29071344

eQTL of rs9844985 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9844985 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3116855036116855114E068-27618
chr3116858505116858969E068-23763
chr3116863645116863699E068-19033
chr3116863743116864136E068-18596
chr3116864683116864805E068-17927
chr3116865080116865130E068-17602
chr3116865373116865461E068-17271
chr3116863743116864136E069-18596
chr3116864683116864805E069-17927
chr3116839507116839637E070-43095
chr3116858505116858969E071-23763
chr3116837567116837757E072-44975
chr3116849448116849580E072-33152
chr3116863645116863699E072-19033
chr3116863743116864136E072-18596
chr3116858505116858969E074-23763
chr3116836399116836687E081-46045
chr3116837567116837757E081-44975
chr3116839507116839637E081-43095
chr3116845875116846303E081-36429
chr3116863645116863699E081-19033
chr3116863743116864136E081-18596
chr3116837567116837757E082-44975
chr3116863743116864136E082-18596
chr3116887558116887723E0824826
chr3116887766116887920E0825034