SNP Detail Info-rs9847462

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0129 (3885/29920,GnomAD)
G=0164 (4778/29118,TOPMED)
G=0140 (701/5008,1000G)
G=0103 (398/3854,ALSPAC)
G=0107 (395/3708,TWINSUK)

Position: chr3:164840807 (GRCh38.p7) (3q26.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 2 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.164840807A>G
GRCh37.p13 chr 3	NC_000003.11:g.164558595A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.752	G=0.248
1000Genomes	American	Sub	694	A=0.920	G=0.080
1000Genomes	East Asian	Sub	1008	A=0.905	G=0.095
1000Genomes	Europe	Sub	1006	A=0.907	G=0.093
1000Genomes	Global	Study-wide	5008	A=0.860	G=0.140
1000Genomes	South Asian	Sub	978	A=0.870	G=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.897	G=0.103
The Genome Aggregation Database	African	Sub	8706	A=0.768	G=0.232
The Genome Aggregation Database	American	Sub	830	A=0.940	G=0.060
The Genome Aggregation Database	East Asian	Sub	1610	A=0.899	G=0.101
The Genome Aggregation Database	Europe	Sub	18472	A=0.912	G=0.087
The Genome Aggregation Database	Global	Study-wide	29920	A=0.870	G=0.129
The Genome Aggregation Database	Other	Sub	302	A=0.910	G=0.090
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.835	G=0.164
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.893	G=0.107

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend
23089632	A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.	Wang JC	Mol Psychiatry

SNP ID	p-value	Traits	Study
rs9847462	2.07E-08	alcohol dependence (age at onset)	24962325
rs9847462	0.000000665	alcohol dependence	23089632

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9847462