rs9850957

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0340 (10188/29940,GnomAD)
T=0377 (10992/29118,TOPMED)
T=0403 (2016/5008,1000G)
T=0208 (800/3854,ALSPAC)
T=0215 (798/3708,TWINSUK)
chr3:177395268 (GRCh38.p7) (3q26.32)
AD
GWASdb2
1   publication(s)
See rs on genome
68 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.177395268C>T
GRCh37.p13 chr 3NC_000003.11:g.177113056C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.367T=0.633
1000GenomesAmericanSub694C=0.810T=0.190
1000GenomesEast AsianSub1008C=0.530T=0.470
1000GenomesEuropeSub1006C=0.774T=0.226
1000GenomesGlobalStudy-wide5008C=0.597T=0.403
1000GenomesSouth AsianSub978C=0.650T=0.350
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.792T=0.208
The Genome Aggregation DatabaseAfricanSub8714C=0.432T=0.568
The Genome Aggregation DatabaseAmericanSub838C=0.740T=0.260
The Genome Aggregation DatabaseEast AsianSub1614C=0.550T=0.450
The Genome Aggregation DatabaseEuropeSub18472C=0.769T=0.230
The Genome Aggregation DatabaseGlobalStudy-wide29940C=0.659T=0.340
The Genome Aggregation DatabaseOtherSub302C=0.880T=0.120
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.622T=0.377
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.785T=0.215
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98509570.000448alcohol dependence20201924

eQTL of rs9850957 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9850957 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3177064041177064189E067-48867
chr3177074760177081001E067-32055
chr3177089881177090041E067-23015
chr3177146850177146894E06733794
chr3177147007177147101E06733951
chr3177149316177150108E06736260
chr3177064041177064189E068-48867
chr3177146850177146894E06833794
chr3177147007177147101E06833951
chr3177156789177156892E06843733
chr3177157297177157347E06844241
chr3177159548177159656E06846492
chr3177159666177160382E06846610
chr3177064041177064189E069-48867
chr3177074760177081001E069-32055
chr3177087975177088525E069-24531
chr3177088704177088788E069-24268
chr3177146850177146894E06933794
chr3177147007177147101E06933951
chr3177149316177150108E06936260
chr3177159548177159656E06946492
chr3177159666177160382E06946610
chr3177064041177064189E070-48867
chr3177074760177081001E070-32055
chr3177089053177089303E070-23753
chr3177089881177090041E070-23015
chr3177148588177148969E07035532
chr3177148993177149053E07035937
chr3177149316177150108E07036260
chr3177064041177064189E071-48867
chr3177074241177074291E071-38765
chr3177074337177074393E071-38663
chr3177074760177081001E071-32055
chr3177128517177128890E07115461
chr3177128940177129128E07115884
chr3177137907177138003E07124851
chr3177138059177138392E07125003
chr3177138415177138527E07125359
chr3177138579177138825E07125523
chr3177146850177146894E07133794
chr3177147007177147101E07133951
chr3177147675177147845E07134619
chr3177064041177064189E072-48867
chr3177074760177081001E072-32055
chr3177064041177064189E073-48867
chr3177074760177081001E073-32055
chr3177064041177064189E074-48867
chr3177074760177081001E074-32055
chr3177146850177146894E07433794
chr3177147007177147101E07433951
chr3177149316177150108E07436260
chr3177157297177157347E07444241
chr3177074760177081001E081-32055
chr3177093166177093518E081-19538
chr3177137907177138003E08124851
chr3177138059177138392E08125003
chr3177138415177138527E08125359
chr3177138579177138825E08125523
chr3177139067177139308E08126011
chr3177139337177139432E08126281
chr3177157997177158107E08144941
chr3177158195177158306E08145139
chr3177158350177158589E08145294
chr3177074760177081001E082-32055
chr3177128517177128890E08215461
chr3177128940177129128E08215884
chr3177138415177138527E08225359
chr3177138579177138825E08225523