SNP Detail Info-rs9855153

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0260 (7773/29870,GnomAD)
A==0212 (6199/29118,TOPMED)
A==0321 (1607/5008,1000G)
A==0269 (1036/3854,ALSPAC)
A==0269 (997/3708,TWINSUK)

Position: chr3:18651731 (GRCh38.p7) (3p24.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.18651731A>G
GRCh37.p13 chr 3	NC_000003.11:g.18693223A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.113	G=0.887
1000Genomes	American	Sub	694	A=0.270	G=0.730
1000Genomes	East Asian	Sub	1008	A=0.506	G=0.494
1000Genomes	Europe	Sub	1006	A=0.299	G=0.701
1000Genomes	Global	Study-wide	5008	A=0.321	G=0.679
1000Genomes	South Asian	Sub	978	A=0.470	G=0.530
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.269	G=0.731
The Genome Aggregation Database	African	Sub	8702	A=0.143	G=0.857
The Genome Aggregation Database	American	Sub	834	A=0.270	G=0.730
The Genome Aggregation Database	East Asian	Sub	1586	A=0.556	G=0.444
The Genome Aggregation Database	Europe	Sub	18446	A=0.287	G=0.712
The Genome Aggregation Database	Global	Study-wide	29870	A=0.260	G=0.739
The Genome Aggregation Database	Other	Sub	302	A=0.390	G=0.610
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.212	G=0.787
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.269	G=0.731

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9855153	0.0002	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
cg10792120	chr13:78550373	EDNRB	0.0174785202781836	1.9189e-9

rs9855153