rs9856879

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0247 (7405/29896,GnomAD)
C=0247 (7198/29118,TOPMED)
C=0298 (1494/5008,1000G)
C=0252 (972/3854,ALSPAC)
C=0237 (879/3708,TWINSUK)
chr3:107042 (GRCh38.p7) (3p26.3)
AD
GWASdb2
1   publication(s)
See rs on genome
108 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.107042T>C
GRCh37.p13 chr 3NC_000003.11:g.148725T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.778C=0.222
1000GenomesAmericanSub694T=0.740C=0.260
1000GenomesEast AsianSub1008T=0.599C=0.401
1000GenomesEuropeSub1006T=0.763C=0.237
1000GenomesGlobalStudy-wide5008T=0.702C=0.298
1000GenomesSouth AsianSub978T=0.610C=0.390
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.748C=0.252
The Genome Aggregation DatabaseAfricanSub8704T=0.758C=0.242
The Genome Aggregation DatabaseAmericanSub832T=0.710C=0.290
The Genome Aggregation DatabaseEast AsianSub1584T=0.609C=0.391
The Genome Aggregation DatabaseEuropeSub18474T=0.764C=0.235
The Genome Aggregation DatabaseGlobalStudy-wide29896T=0.752C=0.247
The Genome Aggregation DatabaseOtherSub302T=0.710C=0.290
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.752C=0.247
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.763C=0.237
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98568790.000201alcohol dependence20201924

eQTL of rs9856879 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9856879 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3104810105451E067-43274
chr3114174114280E067-34445
chr3114437114799E067-33926
chr3141018141128E067-7597
chr3114174114280E068-34445
chr3114437114799E068-33926
chr3114802115003E068-33722
chr3115137115254E068-33471
chr3115361115440E068-33285
chr3139390139586E068-9139
chr3139704139834E068-8891
chr3141018141128E068-7597
chr3141277141526E068-7199
chr3104810105451E069-43274
chr3105525105633E069-43092
chr3114174114280E069-34445
chr3114437114799E069-33926
chr3114802115003E069-33722
chr3115137115254E069-33471
chr3115361115440E069-33285
chr3141018141128E069-7597
chr3114174114280E070-34445
chr3114437114799E070-33926
chr3114802115003E070-33722
chr3115137115254E070-33471
chr3115361115440E070-33285
chr3116283116363E070-32362
chr3116414116901E070-31824
chr3117032117204E070-31521
chr3117319117416E070-31309
chr3117466117544E070-31181
chr3123630123786E070-24939
chr3123847123912E070-24813
chr3124839125153E070-23572
chr3139183139333E070-9392
chr3139390139586E070-9139
chr3139704139834E070-8891
chr3142138142206E070-6519
chr3144310144411E070-4314
chr3145812145986E070-2739
chr3152159152209E0703434
chr3152592152664E0703867
chr3152974153132E0704249
chr3153343153416E0704618
chr3173051173150E07024326
chr3173301173444E07024576
chr3104810105451E071-43274
chr3105525105633E071-43092
chr3114174114280E071-34445
chr3114437114799E071-33926
chr3114802115003E071-33722
chr3115137115254E071-33471
chr3141018141128E071-7597
chr3141277141526E071-7199
chr3105525105633E072-43092
chr3114174114280E072-34445
chr3114437114799E072-33926
chr3114802115003E072-33722
chr3115137115254E072-33471
chr3115361115440E072-33285
chr3141018141128E072-7597
chr3141018141128E073-7597
chr3141277141526E073-7199
chr3142138142206E073-6519
chr3111467111643E074-37082
chr3114437114799E074-33926
chr3114802115003E074-33722
chr3115137115254E074-33471
chr3115361115440E074-33285
chr3141018141128E074-7597
chr3141277141526E074-7199
chr3104810105451E081-43274
chr3105525105633E081-43092
chr3114437114799E081-33926
chr3114802115003E081-33722
chr3115137115254E081-33471
chr3115361115440E081-33285
chr3123630123786E081-24939
chr3139183139333E081-9392
chr3139390139586E081-9139
chr3139704139834E081-8891
chr3141018141128E081-7597
chr3141277141526E081-7199
chr3164584164709E08115859
chr3173051173150E08124326
chr3173301173444E08124576
chr3104810105451E082-43274
chr3105525105633E082-43092
chr3114437114799E082-33926
chr3114802115003E082-33722
chr3115137115254E082-33471
chr3115361115440E082-33285
chr3117032117204E082-31521
chr3117319117416E082-31309
chr3117466117544E082-31181
chr3139183139333E082-9392
chr3139390139586E082-9139
chr3139704139834E082-8891
chr3141018141128E082-7597
chr3141277141526E082-7199
chr3142138142206E082-6519
chr3152974153132E0824249
chr3153343153416E0824618
chr3164433164483E08215708
chr3164584164709E08215859
chr3173051173150E08224326
chr3173301173444E08224576
chr3182518182753E08233793