Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.149626828C>A |
GRCh37.p13 chr 3 | NC_000003.11:g.149344615C>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
WWTR1 transcript variant 2 | NM_001168278.1:c. | N/A | Intron Variant |
WWTR1 transcript variant 3 | NM_001168280.1:c. | N/A | Intron Variant |
WWTR1 transcript variant 1 | NM_015472.4:c. | N/A | Intron Variant |
WWTR1 transcript variant X1 | XM_017006121.1:c. | N/A | Intron Variant |
WWTR1 transcript variant X1 | XM_017006122.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.711 | A=0.289 |
1000Genomes | American | Sub | 694 | C=0.520 | A=0.480 |
1000Genomes | East Asian | Sub | 1008 | C=0.572 | A=0.428 |
1000Genomes | Europe | Sub | 1006 | C=0.359 | A=0.641 |
1000Genomes | Global | Study-wide | 5008 | C=0.538 | A=0.462 |
1000Genomes | South Asian | Sub | 978 | C=0.470 | A=0.530 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.374 | A=0.626 |
The Genome Aggregation Database | African | Sub | 8678 | C=0.635 | A=0.365 |
The Genome Aggregation Database | American | Sub | 834 | C=0.530 | A=0.470 |
The Genome Aggregation Database | East Asian | Sub | 1612 | C=0.639 | A=0.361 |
The Genome Aggregation Database | Europe | Sub | 18426 | C=0.377 | A=0.622 |
The Genome Aggregation Database | Global | Study-wide | 29852 | C=0.469 | A=0.530 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.300 | A=0.700 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.471 | A=0.528 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.359 | A=0.641 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs9857773 | 0.00047 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 149298848 | 149298917 | E067 | -45698 |
chr3 | 149304761 | 149304956 | E067 | -39659 |
chr3 | 149308522 | 149308779 | E067 | -35836 |
chr3 | 149327988 | 149328641 | E067 | -15974 |
chr3 | 149335966 | 149336209 | E067 | -8406 |
chr3 | 149348580 | 149349007 | E067 | 3965 |
chr3 | 149355456 | 149355618 | E067 | 10841 |
chr3 | 149355674 | 149355744 | E067 | 11059 |
chr3 | 149355900 | 149356028 | E067 | 11285 |
chr3 | 149359059 | 149359262 | E067 | 14444 |
chr3 | 149359298 | 149359436 | E067 | 14683 |
chr3 | 149294930 | 149295408 | E068 | -49207 |
chr3 | 149298625 | 149298796 | E068 | -45819 |
chr3 | 149298848 | 149298917 | E068 | -45698 |
chr3 | 149299011 | 149300464 | E068 | -44151 |
chr3 | 149301475 | 149301622 | E068 | -42993 |
chr3 | 149301660 | 149301744 | E068 | -42871 |
chr3 | 149301816 | 149301977 | E068 | -42638 |
chr3 | 149302130 | 149302295 | E068 | -42320 |
chr3 | 149308522 | 149308779 | E068 | -35836 |
chr3 | 149309002 | 149309130 | E068 | -35485 |
chr3 | 149310425 | 149311137 | E068 | -33478 |
chr3 | 149311212 | 149311525 | E068 | -33090 |
chr3 | 149311682 | 149311773 | E068 | -32842 |
chr3 | 149319629 | 149319692 | E068 | -24923 |
chr3 | 149319995 | 149320047 | E068 | -24568 |
chr3 | 149320179 | 149320366 | E068 | -24249 |
chr3 | 149320699 | 149320775 | E068 | -23840 |
chr3 | 149320919 | 149321192 | E068 | -23423 |
chr3 | 149321301 | 149321599 | E068 | -23016 |
chr3 | 149321616 | 149321738 | E068 | -22877 |
chr3 | 149322018 | 149322188 | E068 | -22427 |
chr3 | 149322217 | 149322794 | E068 | -21821 |
chr3 | 149327401 | 149327760 | E068 | -16855 |
chr3 | 149327808 | 149327920 | E068 | -16695 |
chr3 | 149327988 | 149328641 | E068 | -15974 |
chr3 | 149328967 | 149329083 | E068 | -15532 |
chr3 | 149329116 | 149329172 | E068 | -15443 |
chr3 | 149330422 | 149330466 | E068 | -14149 |
chr3 | 149330921 | 149331104 | E068 | -13511 |
chr3 | 149335056 | 149335177 | E068 | -9438 |
chr3 | 149335966 | 149336209 | E068 | -8406 |
chr3 | 149348440 | 149348494 | E068 | 3825 |
chr3 | 149348580 | 149349007 | E068 | 3965 |
chr3 | 149352010 | 149352163 | E068 | 7395 |
chr3 | 149352487 | 149352670 | E068 | 7872 |
chr3 | 149352706 | 149352750 | E068 | 8091 |
chr3 | 149355456 | 149355618 | E068 | 10841 |
chr3 | 149355674 | 149355744 | E068 | 11059 |
chr3 | 149355900 | 149356028 | E068 | 11285 |
chr3 | 149359059 | 149359262 | E068 | 14444 |
chr3 | 149359298 | 149359436 | E068 | 14683 |
chr3 | 149359601 | 149359704 | E068 | 14986 |
chr3 | 149360894 | 149360994 | E068 | 16279 |
chr3 | 149361506 | 149361610 | E068 | 16891 |
chr3 | 149361904 | 149361996 | E068 | 17289 |
chr3 | 149365790 | 149365908 | E068 | 21175 |
chr3 | 149365976 | 149366098 | E068 | 21361 |
chr3 | 149301816 | 149301977 | E069 | -42638 |
chr3 | 149302130 | 149302295 | E069 | -42320 |
chr3 | 149308522 | 149308779 | E069 | -35836 |
chr3 | 149327401 | 149327760 | E069 | -16855 |
chr3 | 149327808 | 149327920 | E069 | -16695 |
chr3 | 149327988 | 149328641 | E069 | -15974 |
chr3 | 149328967 | 149329083 | E069 | -15532 |
chr3 | 149329116 | 149329172 | E069 | -15443 |
chr3 | 149348440 | 149348494 | E069 | 3825 |
chr3 | 149348580 | 149349007 | E069 | 3965 |
chr3 | 149359059 | 149359262 | E069 | 14444 |
chr3 | 149359298 | 149359436 | E069 | 14683 |
chr3 | 149366254 | 149366737 | E069 | 21639 |
chr3 | 149371165 | 149371209 | E069 | 26550 |
chr3 | 149371343 | 149371480 | E069 | 26728 |
chr3 | 149371518 | 149371568 | E069 | 26903 |
chr3 | 149371641 | 149371731 | E069 | 27026 |
chr3 | 149310425 | 149311137 | E070 | -33478 |
chr3 | 149311212 | 149311525 | E070 | -33090 |
chr3 | 149311682 | 149311773 | E070 | -32842 |
chr3 | 149312316 | 149312469 | E070 | -32146 |
chr3 | 149319995 | 149320047 | E070 | -24568 |
chr3 | 149320179 | 149320366 | E070 | -24249 |
chr3 | 149320699 | 149320775 | E070 | -23840 |
chr3 | 149320919 | 149321192 | E070 | -23423 |
chr3 | 149321301 | 149321599 | E070 | -23016 |
chr3 | 149321616 | 149321738 | E070 | -22877 |
chr3 | 149322018 | 149322188 | E070 | -22427 |
chr3 | 149322217 | 149322794 | E070 | -21821 |
chr3 | 149327808 | 149327920 | E070 | -16695 |
chr3 | 149327988 | 149328641 | E070 | -15974 |
chr3 | 149355456 | 149355618 | E070 | 10841 |
chr3 | 149355674 | 149355744 | E070 | 11059 |
chr3 | 149355900 | 149356028 | E070 | 11285 |
chr3 | 149297044 | 149297246 | E071 | -47369 |
chr3 | 149297582 | 149298303 | E071 | -46312 |
chr3 | 149299011 | 149300464 | E071 | -44151 |
chr3 | 149301475 | 149301622 | E071 | -42993 |
chr3 | 149301660 | 149301744 | E071 | -42871 |
chr3 | 149301816 | 149301977 | E071 | -42638 |
chr3 | 149302130 | 149302295 | E071 | -42320 |
chr3 | 149302510 | 149302562 | E071 | -42053 |
chr3 | 149304761 | 149304956 | E071 | -39659 |
chr3 | 149304963 | 149305084 | E071 | -39531 |
chr3 | 149310425 | 149311137 | E071 | -33478 |
chr3 | 149311212 | 149311525 | E071 | -33090 |
chr3 | 149320919 | 149321192 | E071 | -23423 |
chr3 | 149321301 | 149321599 | E071 | -23016 |
chr3 | 149321616 | 149321738 | E071 | -22877 |
chr3 | 149322018 | 149322188 | E071 | -22427 |
chr3 | 149322217 | 149322794 | E071 | -21821 |
chr3 | 149322843 | 149322937 | E071 | -21678 |
chr3 | 149327808 | 149327920 | E071 | -16695 |
chr3 | 149327988 | 149328641 | E071 | -15974 |
chr3 | 149328967 | 149329083 | E071 | -15532 |
chr3 | 149329116 | 149329172 | E071 | -15443 |
chr3 | 149335056 | 149335177 | E071 | -9438 |
chr3 | 149335966 | 149336209 | E071 | -8406 |
chr3 | 149336535 | 149336957 | E071 | -7658 |
chr3 | 149348440 | 149348494 | E071 | 3825 |
chr3 | 149348580 | 149349007 | E071 | 3965 |
chr3 | 149351800 | 149351882 | E071 | 7185 |
chr3 | 149352010 | 149352163 | E071 | 7395 |
chr3 | 149352487 | 149352670 | E071 | 7872 |
chr3 | 149352706 | 149352750 | E071 | 8091 |
chr3 | 149355456 | 149355618 | E071 | 10841 |
chr3 | 149355674 | 149355744 | E071 | 11059 |
chr3 | 149355900 | 149356028 | E071 | 11285 |
chr3 | 149359059 | 149359262 | E071 | 14444 |
chr3 | 149359298 | 149359436 | E071 | 14683 |
chr3 | 149359601 | 149359704 | E071 | 14986 |
chr3 | 149361304 | 149361362 | E071 | 16689 |
chr3 | 149361904 | 149361996 | E071 | 17289 |
chr3 | 149365976 | 149366098 | E071 | 21361 |
chr3 | 149366254 | 149366737 | E071 | 21639 |
chr3 | 149371518 | 149371568 | E071 | 26903 |
chr3 | 149327988 | 149328641 | E072 | -15974 |
chr3 | 149348440 | 149348494 | E072 | 3825 |
chr3 | 149348580 | 149349007 | E072 | 3965 |
chr3 | 149359059 | 149359262 | E072 | 14444 |
chr3 | 149359298 | 149359436 | E072 | 14683 |
chr3 | 149295604 | 149296016 | E073 | -48599 |
chr3 | 149299011 | 149300464 | E073 | -44151 |
chr3 | 149320179 | 149320366 | E073 | -24249 |
chr3 | 149320699 | 149320775 | E073 | -23840 |
chr3 | 149320919 | 149321192 | E073 | -23423 |
chr3 | 149322018 | 149322188 | E073 | -22427 |
chr3 | 149322217 | 149322794 | E073 | -21821 |
chr3 | 149335966 | 149336209 | E073 | -8406 |
chr3 | 149348440 | 149348494 | E073 | 3825 |
chr3 | 149352487 | 149352670 | E073 | 7872 |
chr3 | 149352706 | 149352750 | E073 | 8091 |
chr3 | 149365976 | 149366098 | E073 | 21361 |
chr3 | 149366254 | 149366737 | E073 | 21639 |
chr3 | 149371165 | 149371209 | E073 | 26550 |
chr3 | 149371343 | 149371480 | E073 | 26728 |
chr3 | 149371518 | 149371568 | E073 | 26903 |
chr3 | 149377243 | 149377299 | E073 | 32628 |
chr3 | 149377526 | 149377609 | E073 | 32911 |
chr3 | 149301475 | 149301622 | E074 | -42993 |
chr3 | 149301660 | 149301744 | E074 | -42871 |
chr3 | 149301816 | 149301977 | E074 | -42638 |
chr3 | 149310425 | 149311137 | E074 | -33478 |
chr3 | 149327988 | 149328641 | E074 | -15974 |
chr3 | 149328967 | 149329083 | E074 | -15532 |
chr3 | 149329116 | 149329172 | E074 | -15443 |
chr3 | 149348440 | 149348494 | E074 | 3825 |
chr3 | 149348580 | 149349007 | E074 | 3965 |
chr3 | 149352487 | 149352670 | E074 | 7872 |
chr3 | 149352706 | 149352750 | E074 | 8091 |
chr3 | 149358620 | 149359026 | E074 | 14005 |
chr3 | 149359059 | 149359262 | E074 | 14444 |
chr3 | 149359298 | 149359436 | E074 | 14683 |
chr3 | 149295604 | 149296016 | E081 | -48599 |
chr3 | 149296278 | 149296328 | E081 | -48287 |
chr3 | 149297044 | 149297246 | E081 | -47369 |
chr3 | 149297582 | 149298303 | E081 | -46312 |
chr3 | 149311682 | 149311773 | E081 | -32842 |
chr3 | 149318517 | 149318864 | E081 | -25751 |
chr3 | 149327401 | 149327760 | E081 | -16855 |
chr3 | 149327808 | 149327920 | E081 | -16695 |
chr3 | 149327988 | 149328641 | E081 | -15974 |
chr3 | 149295604 | 149296016 | E082 | -48599 |
chr3 | 149296278 | 149296328 | E082 | -48287 |
chr3 | 149297044 | 149297246 | E082 | -47369 |
chr3 | 149299011 | 149300464 | E082 | -44151 |
chr3 | 149310425 | 149311137 | E082 | -33478 |
chr3 | 149311212 | 149311525 | E082 | -33090 |
chr3 | 149311682 | 149311773 | E082 | -32842 |
chr3 | 149318517 | 149318864 | E082 | -25751 |
chr3 | 149327988 | 149328641 | E082 | -15974 |
chr3 | 149328967 | 149329083 | E082 | -15532 |
chr3 | 149329116 | 149329172 | E082 | -15443 |
chr3 | 149355900 | 149356028 | E082 | 11285 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 149373943 | 149377198 | E067 | 29328 |
chr3 | 149373321 | 149373699 | E068 | 28706 |
chr3 | 149373702 | 149373835 | E068 | 29087 |
chr3 | 149373943 | 149377198 | E068 | 29328 |
chr3 | 149373702 | 149373835 | E069 | 29087 |
chr3 | 149373943 | 149377198 | E069 | 29328 |
chr3 | 149373321 | 149373699 | E070 | 28706 |
chr3 | 149373702 | 149373835 | E070 | 29087 |
chr3 | 149373321 | 149373699 | E071 | 28706 |
chr3 | 149373702 | 149373835 | E071 | 29087 |
chr3 | 149373943 | 149377198 | E071 | 29328 |
chr3 | 149373321 | 149373699 | E072 | 28706 |
chr3 | 149373702 | 149373835 | E072 | 29087 |
chr3 | 149373943 | 149377198 | E072 | 29328 |
chr3 | 149373321 | 149373699 | E073 | 28706 |
chr3 | 149373702 | 149373835 | E073 | 29087 |
chr3 | 149373943 | 149377198 | E073 | 29328 |
chr3 | 149373943 | 149377198 | E074 | 29328 |
chr3 | 149373943 | 149377198 | E082 | 29328 |