SNP Detail Info-rs9860789

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0050 (1506/29942,GnomAD)
G=0063 (1852/29118,TOPMED)
G=0047 (233/5008,1000G)
G=0033 (128/3854,ALSPAC)
G=0030 (113/3708,TWINSUK)

Position: chr3:102748207 (GRCh38.p7) (3q12.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.102748207A>G
GRCh37.p13 chr 3	NC_000003.11:g.102467051A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.901	G=0.099
1000Genomes	American	Sub	694	A=0.970	G=0.030
1000Genomes	East Asian	Sub	1008	A=1.000	G=0.000
1000Genomes	Europe	Sub	1006	A=0.957	G=0.043
1000Genomes	Global	Study-wide	5008	A=0.953	G=0.047
1000Genomes	South Asian	Sub	978	A=0.960	G=0.040
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.967	G=0.033
The Genome Aggregation Database	African	Sub	8712	A=0.902	G=0.098
The Genome Aggregation Database	American	Sub	836	A=0.970	G=0.030
The Genome Aggregation Database	East Asian	Sub	1616	A=0.999	G=0.001
The Genome Aggregation Database	Europe	Sub	18476	A=0.967	G=0.032
The Genome Aggregation Database	Global	Study-wide	29942	A=0.949	G=0.050
The Genome Aggregation Database	Other	Sub	302	A=0.890	G=0.110
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.936	G=0.063
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.970	G=0.030

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs9860789	0.000223	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9860789