rs9862987

Homo sapiens
A>C
LINC01324 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0138 (4161/29974,GnomAD)
C=0178 (5182/29118,TOPMED)
C=0150 (753/5008,1000G)
C=0104 (399/3854,ALSPAC)
C=0107 (395/3708,TWINSUK)
chr3:164813439 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164813439A>C
GRCh37.p13 chr 3NC_000003.11:g.164531227A>C

Gene: LINC01324, long intergenic non-protein coding RNA 1324(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01324 transcriptNR_126405.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.714C=0.286
1000GenomesAmericanSub694A=0.920C=0.080
1000GenomesEast AsianSub1008A=0.905C=0.095
1000GenomesEuropeSub1006A=0.907C=0.093
1000GenomesGlobalStudy-wide5008A=0.850C=0.150
1000GenomesSouth AsianSub978A=0.870C=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.896C=0.104
The Genome Aggregation DatabaseAfricanSub8716A=0.737C=0.263
The Genome Aggregation DatabaseAmericanSub836A=0.940C=0.060
The Genome Aggregation DatabaseEast AsianSub1622A=0.898C=0.102
The Genome Aggregation DatabaseEuropeSub18498A=0.912C=0.088
The Genome Aggregation DatabaseGlobalStudy-wide29974A=0.861C=0.138
The Genome Aggregation DatabaseOtherSub302A=0.910C=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.822C=0.178
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.893C=0.107
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs98629874.31E-08alcohol dependence (age at onset)24962325

eQTL of rs9862987 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9862987 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.