rs9864104

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0265 (7961/29940,GnomAD)
T=0309 (9008/29118,TOPMED)
T=0382 (1915/5008,1000G)
T=0154 (594/3854,ALSPAC)
T=0144 (535/3708,TWINSUK)
chr3:185639743 (GRCh38.p7) (3q27.2)
AD
GWASdb2
2   publication(s)
See rs on genome
70 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.185639743C>T
GRCh37.p13 chr 3NC_000003.11:g.185357531C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.483T=0.517
1000GenomesAmericanSub694C=0.750T=0.250
1000GenomesEast AsianSub1008C=0.527T=0.473
1000GenomesEuropeSub1006C=0.845T=0.155
1000GenomesGlobalStudy-wide5008C=0.618T=0.382
1000GenomesSouth AsianSub978C=0.570T=0.430
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.846T=0.154
The Genome Aggregation DatabaseAfricanSub8704C=0.528T=0.472
The Genome Aggregation DatabaseAmericanSub836C=0.740T=0.260
The Genome Aggregation DatabaseEast AsianSub1618C=0.506T=0.494
The Genome Aggregation DatabaseEuropeSub18480C=0.850T=0.149
The Genome Aggregation DatabaseGlobalStudy-wide29940C=0.734T=0.265
The Genome Aggregation DatabaseOtherSub302C=0.750T=0.250
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.690T=0.309
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.856T=0.144
PMID Title Author Journal
18430866Evaluation of the association of IGF2BP2 variants with type 2 diabetes in French Caucasians.Duesing KDiabetes
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98641040.000487alcohol dependence21314694

eQTL of rs9864104 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9864104 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3185347420185347470E067-10061
chr3185347578185347666E067-9865
chr3185347672185347726E067-9805
chr3185347803185347871E067-9660
chr3185347977185348425E067-9106
chr3185348437185348548E067-8983
chr3185373350185373810E06715819
chr3185374053185374816E06716522
chr3185347420185347470E068-10061
chr3185347578185347666E068-9865
chr3185347672185347726E068-9805
chr3185347803185347871E068-9660
chr3185347977185348425E068-9106
chr3185348437185348548E068-8983
chr3185348775185348855E068-8676
chr3185373350185373810E06815819
chr3185347420185347470E069-10061
chr3185347578185347666E069-9865
chr3185347672185347726E069-9805
chr3185347803185347871E069-9660
chr3185347977185348425E069-9106
chr3185348437185348548E069-8983
chr3185373350185373810E06915819
chr3185374053185374816E06916522
chr3185347977185348425E070-9106
chr3185348437185348548E070-8983
chr3185405031185405607E07047500
chr3185405632185405682E07048101
chr3185347420185347470E071-10061
chr3185347578185347666E071-9865
chr3185347672185347726E071-9805
chr3185347803185347871E071-9660
chr3185347977185348425E071-9106
chr3185373350185373810E07115819
chr3185374053185374816E07116522
chr3185347420185347470E072-10061
chr3185347578185347666E072-9865
chr3185347672185347726E072-9805
chr3185347803185347871E072-9660
chr3185347977185348425E072-9106
chr3185373350185373810E07215819
chr3185374053185374816E07216522
chr3185375370185375787E07217839
chr3185375886185375967E07218355
chr3185375999185376208E07218468
chr3185347420185347470E073-10061
chr3185347578185347666E073-9865
chr3185347672185347726E073-9805
chr3185347803185347871E073-9660
chr3185347977185348425E073-9106
chr3185373350185373810E07315819
chr3185374053185374816E07316522
chr3185375370185375787E07317839
chr3185375886185375967E07318355
chr3185375999185376208E07318468
chr3185347420185347470E074-10061
chr3185347578185347666E074-9865
chr3185347672185347726E074-9805
chr3185347803185347871E074-9660
chr3185347977185348425E074-9106
chr3185373350185373810E07415819
chr3185374053185374816E07416522
chr3185377837185378771E07420306
chr3185377837185378771E08120306
chr3185398101185398265E08140570
chr3185404271185404316E08146740
chr3185404677185404922E08147146
chr3185404677185404922E08247146
chr3185405031185405607E08247500
chr3185405632185405682E08248101