SNP Detail Info-rs9865078

Organism: Homo sapiens

Alleles: G>A / G>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0132 (3970/29954,GnomAD)
A=0167 (4866/29118,TOPMED)
A=0142 (712/5008,1000G)
A=0104 (400/3854,ALSPAC)
A=0106 (393/3708,TWINSUK)

Position: chr3:164861522 (GRCh38.p7) (3q26.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.744	A=0.256
1000Genomes	American	Sub	694	G=0.920	A=0.080
1000Genomes	East Asian	Sub	1008	G=0.906	A=0.094
1000Genomes	Europe	Sub	1006	G=0.907	A=0.093
1000Genomes	Global	Study-wide	5008	G=0.858	A=0.142
1000Genomes	South Asian	Sub	978	G=0.870	A=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.896	A=0.104
The Genome Aggregation Database	African	Sub	8714	G=0.758	C=0.000
The Genome Aggregation Database	American	Sub	838	G=0.940	C=0.00,
The Genome Aggregation Database	East Asian	Sub	1618	G=0.900	C=0.000
The Genome Aggregation Database	Europe	Sub	18484	G=0.912	C=0.000
The Genome Aggregation Database	Global	Study-wide	29954	G=0.867	C=0.000
The Genome Aggregation Database	Other	Sub	300	G=0.910	C=0.00,
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.832	A=0.167
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.894	A=0.106

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend

SNP ID	p-value	Traits	Study
rs9865078	9.71E-09	alcohol dependence (age at onset)	24962325

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs9865078