rs9865078

Homo sapiens
G>A / G>C
None
Check p-value
SNV (Single Nucleotide Variation)
A=0132 (3970/29954,GnomAD)
A=0167 (4866/29118,TOPMED)
A=0142 (712/5008,1000G)
A=0104 (400/3854,ALSPAC)
A=0106 (393/3708,TWINSUK)
chr3:164861522 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164861522G>A
GRCh38.p7 chr 3NC_000003.12:g.164861522G>C
GRCh37.p13 chr 3NC_000003.11:g.164579310G>A
GRCh37.p13 chr 3NC_000003.11:g.164579310G>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.744A=0.256
1000GenomesAmericanSub694G=0.920A=0.080
1000GenomesEast AsianSub1008G=0.906A=0.094
1000GenomesEuropeSub1006G=0.907A=0.093
1000GenomesGlobalStudy-wide5008G=0.858A=0.142
1000GenomesSouth AsianSub978G=0.870A=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.896A=0.104
The Genome Aggregation DatabaseAfricanSub8714G=0.758C=0.000
The Genome Aggregation DatabaseAmericanSub838G=0.940C=0.00,
The Genome Aggregation DatabaseEast AsianSub1618G=0.900C=0.000
The Genome Aggregation DatabaseEuropeSub18484G=0.912C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29954G=0.867C=0.000
The Genome Aggregation DatabaseOtherSub300G=0.910C=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.832A=0.167
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.894A=0.106
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs98650789.71E-09alcohol dependence (age at onset)24962325

eQTL of rs9865078 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9865078 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.