rs9871275

Homo sapiens
C>T
LINC01324 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0138 (4139/29952,GnomAD)
T=0176 (5137/29118,TOPMED)
T=0149 (746/5008,1000G)
T=0103 (397/3854,ALSPAC)
T=0105 (390/3708,TWINSUK)
chr3:164802995 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164802995C>T
GRCh37.p13 chr 3NC_000003.11:g.164520783C>T

Gene: LINC01324, long intergenic non-protein coding RNA 1324(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01324 transcriptNR_126405.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.720T=0.280
1000GenomesAmericanSub694C=0.920T=0.080
1000GenomesEast AsianSub1008C=0.905T=0.095
1000GenomesEuropeSub1006C=0.907T=0.093
1000GenomesGlobalStudy-wide5008C=0.851T=0.149
1000GenomesSouth AsianSub978C=0.870T=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.897T=0.103
The Genome Aggregation DatabaseAfricanSub8706C=0.740T=0.260
The Genome Aggregation DatabaseAmericanSub838C=0.940T=0.060
The Genome Aggregation DatabaseEast AsianSub1620C=0.898T=0.102
The Genome Aggregation DatabaseEuropeSub18486C=0.911T=0.088
The Genome Aggregation DatabaseGlobalStudy-wide29952C=0.861T=0.138
The Genome Aggregation DatabaseOtherSub302C=0.910T=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.823T=0.176
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.895T=0.105
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs98712752.11E-08alcohol dependence (age at onset)24962325

eQTL of rs9871275 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9871275 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.