rs9871864

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0408 (12220/29906,GnomAD)
C=0373 (10861/29118,TOPMED)
C=0318 (1594/5008,1000G)
C=0452 (1743/3854,ALSPAC)
C=0452 (1677/3708,TWINSUK)
chr3:20311274 (GRCh38.p7) (3p24.3)
AD
GWASCatalog
1   publication(s)
See rs on genome
8 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.20311274T>C
GRCh37.p13 chr 3NC_000003.11:g.20352766T>C
GRCh38.p7 chr 3 alt locus HSCHR3_3_CTG1NT_187535.1:g.37867T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.688C=0.312
1000GenomesAmericanSub694T=0.720C=0.280
1000GenomesEast AsianSub1008T=0.752C=0.248
1000GenomesEuropeSub1006T=0.550C=0.450
1000GenomesGlobalStudy-wide5008T=0.682C=0.318
1000GenomesSouth AsianSub978T=0.710C=0.290
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.548C=0.452
The Genome Aggregation DatabaseAfricanSub8694T=0.656C=0.344
The Genome Aggregation DatabaseAmericanSub838T=0.710C=0.290
The Genome Aggregation DatabaseEast AsianSub1610T=0.715C=0.285
The Genome Aggregation DatabaseEuropeSub18462T=0.544C=0.455
The Genome Aggregation DatabaseGlobalStudy-wide29906T=0.591C=0.408
The Genome Aggregation DatabaseOtherSub302T=0.600C=0.400
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.627C=0.373
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.548C=0.452
PMID Title Author Journal
23942779A genome-wide association study of behavioral disinhibition.McGue MBehav Genet

P-Value

SNP ID p-value Traits Study
rs98718646E-06alcohol dependence23942779

eQTL of rs9871864 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9871864 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr32035770520357999E0684939
chr32035770520357999E0694939
chr32035831220358480E0695546
chr32035770520357999E0714939
chr32035831220358480E0715546
chr32035770520357999E0724939
chr32035831220358480E0745546
chr32034428620344584E081-8182