rs9873502

Homo sapiens
G>T
LOC105374017 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0053 (1600/29966,GnomAD)
T=0068 (1995/29118,TOPMED)
T=0050 (250/5008,1000G)
T=0035 (133/3854,ALSPAC)
T=0032 (118/3708,TWINSUK)
chr3:102717678 (GRCh38.p7) (3q12.3)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.102717678G>T
GRCh37.p13 chr 3NC_000003.11:g.102436522G>T

Gene: LOC105374017, uncharacterized LOC105374017(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105374017 transcript variant X1XR_924293.2:n.N/AIntron Variant
LOC105374017 transcript variant X3XR_924294.2:n.N/AIntron Variant
LOC105374017 transcript variant X2XR_924295.2:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.888T=0.112
1000GenomesAmericanSub694G=0.970T=0.030
1000GenomesEast AsianSub1008G=1.000T=0.000
1000GenomesEuropeSub1006G=0.957T=0.043
1000GenomesGlobalStudy-wide5008G=0.950T=0.050
1000GenomesSouth AsianSub978G=0.960T=0.040
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.965T=0.035
The Genome Aggregation DatabaseAfricanSub8718G=0.892T=0.108
The Genome Aggregation DatabaseAmericanSub836G=0.970T=0.030
The Genome Aggregation DatabaseEast AsianSub1618G=0.999T=0.001
The Genome Aggregation DatabaseEuropeSub18492G=0.967T=0.032
The Genome Aggregation DatabaseGlobalStudy-wide29966G=0.946T=0.053
The Genome Aggregation DatabaseOtherSub302G=0.890T=0.110
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.931T=0.068
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.968T=0.032
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs98735020.0006alcohol dependence20201924

eQTL of rs9873502 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9873502 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3102392281102393056E069-43466
chr3102392281102393056E073-43466
chr3102393411102393477E073-43045
chr3102393684102393764E073-42758