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rs9873722
Organism:
Homo sapiens
Alleles:
A>G
Gene : Feature
None
p-value:
Check p-value
Variation Type:
SNV (Single Nucleotide Variation)
Frequency:
G=0136 (4083/29920,GnomAD)
G=0174 (5069/29118,TOPMED)
G=0148 (742/5008,1000G)
G=0104 (400/3854,ALSPAC)
G=0106 (394/3708,TWINSUK)
Position:
chr3:164845602 (GRCh38.p7) (3q26.1)
Phenotype:
AD
Dataset:
GWASdb2
Publications:
1 publication(s)
Genomic View:
See rs on genome
Enhancer:
0 Enhancer around
Promoter:
0 Promoter around
Variant Details
Frequency
Publications
p-values
eSNP
meSNP
Genomic Coordinates
Sequence Name
Change(s)
GRCh38.p7 chr 3
NC_000003.12:g.164845602A>G
GRCh37.p13 chr 3
NC_000003.11:g.164563390A>G
Population Frequency
Study
Population
Group
Sample #
Ref Allele
Alt Allele
1000Genomes
African
Sub
1322
A=0.722
G=0.278
1000Genomes
American
Sub
694
A=0.920
G=0.080
1000Genomes
East Asian
Sub
1008
A=0.905
G=0.095
1000Genomes
Europe
Sub
1006
A=0.907
G=0.093
1000Genomes
Global
Study-wide
5008
A=0.852
G=0.148
1000Genomes
South Asian
Sub
978
A=0.870
G=0.130
The Avon Longitudinal Study of Parents and Children
PARENT AND CHILD COHORT
Study-wide
3854
A=0.896
G=0.104
The Genome Aggregation Database
African
Sub
8698
A=0.746
G=0.254
The Genome Aggregation Database
American
Sub
836
A=0.940
G=0.060
The Genome Aggregation Database
East Asian
Sub
1600
A=0.897
G=0.102
The Genome Aggregation Database
Europe
Sub
18484
A=0.911
G=0.088
The Genome Aggregation Database
Global
Study-wide
29920
A=0.863
G=0.136
The Genome Aggregation Database
Other
Sub
302
A=0.910
G=0.090
Trans-Omics for Precision Medicine
Global
Study-wide
29118
A=0.825
G=0.174
UK 10K study - Twins
TWIN COHORT
Study-wide
3708
A=0.894
G=0.106
PMID
Title
Author
Journal
24962325
Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.
Kapoor M
Drug Alcohol Depend
P-Value
SNP ID
p-value
Traits
Study
rs9873722
2.07E-08
alcohol dependence (age at onset)
24962325
eQTL of rs9873722 in Brain tissues (GTEx Analysis Release V7)
Position (v37)
eGene
GeneID
Variant
p-value
TSS
Tissue
There is no eQTL annotation for this SNP
meQTL of rs9873722 in Fetal Brain
Probe ID
Position
Gene
beta
p-value
There is no meQTL annotation for this SNP
Genomic View
GRCh38.p7 chr 3(NC_000003.12:g.164845602A>G)
GRCh37.p13 chr 3(NC_000003.11:g.164563390A>G)
Chromatin Interaction
There is no significant Hi-C chromatin interaction data for this SNP.