rs9874932

Homo sapiens
G>A / G>T
None
Check p-value
SNV (Single Nucleotide Variation)
A=0197 (5903/29898,GnomAD)
A=0271 (7901/29118,TOPMED)
A=0215 (1076/5008,1000G)
A=0104 (400/3854,ALSPAC)
A=0108 (399/3708,TWINSUK)
chr3:164838860 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164838860G>A
GRCh38.p7 chr 3NC_000003.12:g.164838860G>T
GRCh37.p13 chr 3NC_000003.11:g.164556648G>A
GRCh37.p13 chr 3NC_000003.11:g.164556648G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.483A=0.517
1000GenomesAmericanSub694G=0.900A=0.100
1000GenomesEast AsianSub1008G=0.902A=0.098
1000GenomesEuropeSub1006G=0.906A=0.094
1000GenomesGlobalStudy-wide5008G=0.785A=0.215
1000GenomesSouth AsianSub978G=0.870A=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.896A=0.104
The Genome Aggregation DatabaseAfricanSub8678G=0.539A=0.461
The Genome Aggregation DatabaseAmericanSub838G=0.930A=0.07,
The Genome Aggregation DatabaseEast AsianSub1612G=0.890A=0.110
The Genome Aggregation DatabaseEuropeSub18470G=0.911A=0.088
The Genome Aggregation DatabaseGlobalStudy-wide29898G=0.802A=0.197
The Genome Aggregation DatabaseOtherSub300G=0.910A=0.09,
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.728A=0.271
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.892A=0.108
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs98749322.07E-08alcohol dependence (age at onset)24962325

eQTL of rs9874932 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9874932 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.