rs9876205

Homo sapiens
T>C
LINC01324 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0133 (3982/29942,GnomAD)
C=0168 (4918/29118,TOPMED)
C=0142 (711/5008,1000G)
C=0104 (400/3854,ALSPAC)
C=0106 (392/3708,TWINSUK)
chr3:164824737 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164824737T>C
GRCh37.p13 chr 3NC_000003.11:g.164542525T>C

Gene: LINC01324, long intergenic non-protein coding RNA 1324(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01324 transcriptNR_126405.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.745C=0.255
1000GenomesAmericanSub694T=0.920C=0.080
1000GenomesEast AsianSub1008T=0.905C=0.095
1000GenomesEuropeSub1006T=0.907C=0.093
1000GenomesGlobalStudy-wide5008T=0.858C=0.142
1000GenomesSouth AsianSub978T=0.870C=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.896C=0.104
The Genome Aggregation DatabaseAfricanSub8720T=0.757C=0.243
The Genome Aggregation DatabaseAmericanSub838T=0.940C=0.060
The Genome Aggregation DatabaseEast AsianSub1612T=0.898C=0.102
The Genome Aggregation DatabaseEuropeSub18470T=0.912C=0.087
The Genome Aggregation DatabaseGlobalStudy-wide29942T=0.867C=0.133
The Genome Aggregation DatabaseOtherSub302T=0.910C=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.831C=0.168
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.894C=0.106
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs98762056.06E-08alcohol dependence (age at onset)24962325

eQTL of rs9876205 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs9876205 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.